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The map label for this gene is sohB

Identifier: 21672552

GI number: 21672552

Start: 308452

End: 309480

Strand: Direct

Name: sohB

Synonym: BUsg272

Alternate gene names: 21672552

Gene position: 308452-309480 (Clockwise)

Preceding gene: 21672551

Following gene: 21672553

Centisome position: 48.09

GC content: 22.93

Gene sequence:

>1029_bases
GTGAATTTACTTTTAAATTACGAGTTGTTTTTAGCAAAAGCAATTACTTTTTTATTTATTATTTTTATAACTCCATTCAT
TTTTAATATAATAAAAAGAAAAAGAACAGATCAGAAAAAATTTAAAATTATTTTATTAGAAGAAAAATATAAAAATATAA
AAAAAGATATTTTATTATCTAAAATGAATAAATTAGAAAAGAAAAAATGGATAAAAGAAGAGAAAAAAAAAGACAAAGAA
TTTGAAAAAAAAAATAAAAATAATATTGTAACTTTAAAGAAAAAAACTCTTTTTGTATTAGATTTCAAAGGTGGAATTCA
TGCACATGAAGTTATTGGATTAAGAGAGGAGATATCTGCAATACTTTTAGCTGCAAACAAAGATGATGAGGTTTTATTAC
GACTAGAAAGCTCAGGTGGTGTAATTCATGGATACGGTTTAGCAGCAGCTCAATTGGAAAGATTGCGTCAAAATAAAATA
CGTTTGATTATATCTATTGATAAAATTGCTGCTAGCGGAGGTTATATGATGGCTTGTGTTGCAGATTATATTATTTCAGC
ACCATTTGCTATAATAGGTTCAATTGGTGTAGTAGGTCAGTTACCTAATTTTAACAAATTATTAAAAAAATGTAACATTG
ATGTTGAGTTACATACTGCTGGAGATTATAAGCGTACATTAACTATGTTTGGTCAAAATACAGAATTAACTCGTAAAAAA
TTTTGTCAAGAATTGAATTTAACACACGAAATTTTTAAAAAATTTATAAAAAAAATGAGACCATGTTTAGACATTGAAAA
TATCTCTAACGGAGAACATTGGTTTGGAACAATAGCTTTTAAAAAAAATTTAGTTGATGAGATTAATACAAGTGATAATA
TTTTAATGTCTAAAATGAAAGAAAAATACACTTTATTAAATATTCAATACATTTATAAAAACAAAAAATTAGAAAATTTT
ACATCTTTCATTATAGAAAACATTAAAATTATTATAATTAAAATATTTTCTTATAAAAAAATTTTGTGA

Upstream 100 bases:

>100_bases
TTATATAATCTAATTAATTTTGATAAAGAAATAATCAACAAGAAAAAAAATTGAAAAAATTTTTATACACTACAAATTTA
TTTTTAAAAAGGTTAATTTT

Downstream 100 bases:

>100_bases
AACTTAATTAAATAGCTCATTAAAAAATTTTAATTTTAAATTAGAGTATATACTCTAAACATTTAAAATATATATAAATT
TTTTAATCTATTGTAAATTA

Product: putative periplasmic protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MNLLLNYELFLAKAITFLFIIFITPFIFNIIKRKRTDQKKFKIILLEEKYKNIKKDILLSKMNKLEKKKWIKEEKKKDKE
FEKKNKNNIVTLKKKTLFVLDFKGGIHAHEVIGLREEISAILLAANKDDEVLLRLESSGGVIHGYGLAAAQLERLRQNKI
RLIISIDKIAASGGYMMACVADYIISAPFAIIGSIGVVGQLPNFNKLLKKCNIDVELHTAGDYKRTLTMFGQNTELTRKK
FCQELNLTHEIFKKFIKKMRPCLDIENISNGEHWFGTIAFKKNLVDEINTSDNILMSKMKEKYTLLNIQYIYKNKKLENF
TSFIIENIKIIIIKIFSYKKIL

Sequences:

>Translated_342_residues
MNLLLNYELFLAKAITFLFIIFITPFIFNIIKRKRTDQKKFKIILLEEKYKNIKKDILLSKMNKLEKKKWIKEEKKKDKE
FEKKNKNNIVTLKKKTLFVLDFKGGIHAHEVIGLREEISAILLAANKDDEVLLRLESSGGVIHGYGLAAAQLERLRQNKI
RLIISIDKIAASGGYMMACVADYIISAPFAIIGSIGVVGQLPNFNKLLKKCNIDVELHTAGDYKRTLTMFGQNTELTRKK
FCQELNLTHEIFKKFIKKMRPCLDIENISNGEHWFGTIAFKKNLVDEINTSDNILMSKMKEKYTLLNIQYIYKNKKLENF
TSFIIENIKIIIIKIFSYKKIL
>Mature_342_residues
MNLLLNYELFLAKAITFLFIIFITPFIFNIIKRKRTDQKKFKIILLEEKYKNIKKDILLSKMNKLEKKKWIKEEKKKDKE
FEKKNKNNIVTLKKKTLFVLDFKGGIHAHEVIGLREEISAILLAANKDDEVLLRLESSGGVIHGYGLAAAQLERLRQNKI
RLIISIDKIAASGGYMMACVADYIISAPFAIIGSIGVVGQLPNFNKLLKKCNIDVELHTAGDYKRTLTMFGQNTELTRKK
FCQELNLTHEIFKKFIKKMRPCLDIENISNGEHWFGTIAFKKNLVDEINTSDNILMSKMKEKYTLLNIQYIYKNKKLENF
TSFIIENIKIIIIKIFSYKKIL

Specific function: Possible protease

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family

Homologues:

Organism=Escherichia coli, GI1787527, Length=342, Percent_Identity=48.8304093567251, Blast_Score=328, Evalue=2e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SOHB_BUCAP (Q8K9P8)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660619.1
- ProteinModelPortal:   Q8K9P8
- SMR:   Q8K9P8
- MEROPS:   S49.002
- EnsemblBacteria:   EBBUCT00000000161
- GeneID:   1005476
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg272
- GeneTree:   EBGT00050000007960
- HOGENOM:   HBG366205
- OMA:   HTAFREY
- ProtClustDB:   PRK11778
- BioCyc:   BAPH198804:BUSG272-MONOMER
- GO:   GO:0006508
- InterPro:   IPR002142
- InterPro:   IPR013703

Pfam domain/function: PF01343 Peptidase_S49; PF08496 Peptidase_S49_N

EC number: 3.4.21.-

Molecular weight: Translated: 39737; Mature: 39737

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: ACT_SITE 172-172

Signals:

None

Transmembrane regions:

HASH(0xc1d4ef0)-;

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLLNYELFLAKAITFLFIIFITPFIFNIIKRKRTDQKKFKIILLEEKYKNIKKDILLS
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEEHHHHHHHHHHHHHH
KMNKLEKKKWIKEEKKKDKEFEKKNKNNIVTLKKKTLFVLDFKGGIHAHEVIGLREEISA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHE
ILLAANKDDEVLLRLESSGGVIHGYGLAAAQLERLRQNKIRLIISIDKIAASGGYMMACV
EEEECCCCCEEEEEEECCCCEEEECCHHHHHHHHHHHCCEEEEEEEEHHHCCCCCHHHHH
ADYIISAPFAIIGSIGVVGQLPNFNKLLKKCNIDVELHTAGDYKRTLTMFGQNTELTRKK
HHHHHHCCHHHHHCCHHHCCCCCHHHHHHHCCCCEEEECCCCCHHHHHCCCCCCHHHHHH
FCQELNLTHEIFKKFIKKMRPCLDIENISNGEHWFGTIAFKKNLVDEINTSDNILMSKMK
HHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHH
EKYTLLNIQYIYKNKKLENFTSFIIENIKIIIIKIFSYKKIL
HHHEEEEEEEEECCCCHHHHHHHHHCCCEEEEEEEEHHHCCH
>Mature Secondary Structure
MNLLLNYELFLAKAITFLFIIFITPFIFNIIKRKRTDQKKFKIILLEEKYKNIKKDILLS
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEEHHHHHHHHHHHHHH
KMNKLEKKKWIKEEKKKDKEFEKKNKNNIVTLKKKTLFVLDFKGGIHAHEVIGLREEISA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHE
ILLAANKDDEVLLRLESSGGVIHGYGLAAAQLERLRQNKIRLIISIDKIAASGGYMMACV
EEEECCCCCEEEEEEECCCCEEEECCHHHHHHHHHHHCCEEEEEEEEHHHCCCCCHHHHH
ADYIISAPFAIIGSIGVVGQLPNFNKLLKKCNIDVELHTAGDYKRTLTMFGQNTELTRKK
HHHHHHCCHHHHHCCHHHCCCCCHHHHHHHCCCCEEEECCCCCHHHHHCCCCCCHHHHHH
FCQELNLTHEIFKKFIKKMRPCLDIENISNGEHWFGTIAFKKNLVDEINTSDNILMSKMK
HHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHH
EKYTLLNIQYIYKNKKLENFTSFIIENIKIIIIKIFSYKKIL
HHHEEEEEEEEECCCCHHHHHHHHHCCCEEEEEEEEHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12089438