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The map label for this gene is ydiK [C]

Identifier: 21672406

GI number: 21672406

Start: 128277

End: 129371

Strand: Direct

Name: ydiK [C]

Synonym: BUsg115

Alternate gene names: 21672406

Gene position: 128277-129371 (Clockwise)

Preceding gene: 21672404

Following gene: 21672407

Centisome position: 20.0

GC content: 30.14

Gene sequence:

>1095_bases
ATGCAAAATCCAAAAGAAAAAATGGATTTATCGCAATTTATTTTATCACTAATATTTATTATTGCTATAAGTGCTACAAG
TTTCTTAATAATTCAACCGTTTATACTTGGTTTTTCTTGGGCAAGTATGATTGTCATTGCAACTTGGCCTCTTATGTTAA
AAATGCAAAAATTTTTAGGAGGTAAACGCTTAGTTGCCGTTATTGGCATGATTATTATTTTACTACTATTATTCATCATT
CCTATAGTTTTTTTAGTAAACAGTTTAATTAAAACTAGCATTCCTCTTATTCATTGGTTTAGTTCTAATAATTTAGAATT
TCCAGAGTTAATTTGGCTTCAAGATATACCCATTATTGGTAAAAAAATCTTCATCAGTTATCAAGAACTATTAGATAGTG
ATGGAGGTGAATTAATTCGTGAAATTAGACCATATATGGGACGTACAACAGAATTTTTTATCATTCAAGCTAAGAATTGC
GGATTATTTATTATGCATTTGACTTTAATGTTGTTATTTAGTCTTTTGCTATATTGGAACGGAGAGAAAATTAGTAATTC
TATTCGTCAGTTCGCGTCGCGTCTCAGCTCTCGGAACGGAGAGGCTATTGTTTTACTTTCAGTTCAAGCTGTGAGAGCTG
TTGCATTAGGTGTAGTAGTAACAGCTTTAATTCAAGCAGTTTTATCAGGAATCGGATTACTCATTTCCGGTGTTCCATAT
TGGACATTACTGATGATTTTAATTGTTTTTTCATGTTTAATACAATTAGGACCATTACCAATCTTAATACCTTCCGTTAT
TTGGCTTTATTGGAACAGTAATACAACTTGGGGTACATTGTTATTAATTTGGAGTTGTTTTGTTTTTATATTGGATAATA
TATTGAGACCATTTTTCATTAGAATAGGATCAGACTTGCCTACTTTTCTAATTTTATTAGGAGTAATTGGTGGTTTGCTT
GCTTTTGGAATGATTGGATTATTTATCGGTCCTGTCGTATTAGTAATATTATATCGTTTGATAGTATCTTGGATATATGG
AATTTCAATTGCTTCTTTTCTAGAAAATACAACTTTGAAATCAAAATCTAATTAA

Upstream 100 bases:

>100_bases
AAATTTTAATGTTATAATTGTTTAGTTATAAAAATTTTGTAGTAAAATTTCGTTTTGCAAATTGATTTATAATATAAAAA
TATTGAGGTGAAACGATTAT

Downstream 100 bases:

>100_bases
ATTTATATCTAAAAAAACATTTTAAATGTTTTTTCATGATAAAATTAAGCGCAATTAATTTTTTAATAACATAAAAAATA
AATAGAATACCAATTTTTAA

Product: putative inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MQNPKEKMDLSQFILSLIFIIAISATSFLIIQPFILGFSWASMIVIATWPLMLKMQKFLGGKRLVAVIGMIIILLLLFII
PIVFLVNSLIKTSIPLIHWFSSNNLEFPELIWLQDIPIIGKKIFISYQELLDSDGGELIREIRPYMGRTTEFFIIQAKNC
GLFIMHLTLMLLFSLLLYWNGEKISNSIRQFASRLSSRNGEAIVLLSVQAVRAVALGVVVTALIQAVLSGIGLLISGVPY
WTLLMILIVFSCLIQLGPLPILIPSVIWLYWNSNTTWGTLLLIWSCFVFILDNILRPFFIRIGSDLPTFLILLGVIGGLL
AFGMIGLFIGPVVLVILYRLIVSWIYGISIASFLENTTLKSKSN

Sequences:

>Translated_364_residues
MQNPKEKMDLSQFILSLIFIIAISATSFLIIQPFILGFSWASMIVIATWPLMLKMQKFLGGKRLVAVIGMIIILLLLFII
PIVFLVNSLIKTSIPLIHWFSSNNLEFPELIWLQDIPIIGKKIFISYQELLDSDGGELIREIRPYMGRTTEFFIIQAKNC
GLFIMHLTLMLLFSLLLYWNGEKISNSIRQFASRLSSRNGEAIVLLSVQAVRAVALGVVVTALIQAVLSGIGLLISGVPY
WTLLMILIVFSCLIQLGPLPILIPSVIWLYWNSNTTWGTLLLIWSCFVFILDNILRPFFIRIGSDLPTFLILLGVIGGLL
AFGMIGLFIGPVVLVILYRLIVSWIYGISIASFLENTTLKSKSN
>Mature_364_residues
MQNPKEKMDLSQFILSLIFIIAISATSFLIIQPFILGFSWASMIVIATWPLMLKMQKFLGGKRLVAVIGMIIILLLLFII
PIVFLVNSLIKTSIPLIHWFSSNNLEFPELIWLQDIPIIGKKIFISYQELLDSDGGELIREIRPYMGRTTEFFIIQAKNC
GLFIMHLTLMLLFSLLLYWNGEKISNSIRQFASRLSSRNGEAIVLLSVQAVRAVALGVVVTALIQAVLSGIGLLISGVPY
WTLLMILIVFSCLIQLGPLPILIPSVIWLYWNSNTTWGTLLLIWSCFVFILDNILRPFFIRIGSDLPTFLILLGVIGGLL
AFGMIGLFIGPVVLVILYRLIVSWIYGISIASFLENTTLKSKSN

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family

Homologues:

Organism=Escherichia coli, GI1787979, Length=345, Percent_Identity=54.7826086956522, Blast_Score=399, Evalue=1e-112,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y115_BUCAP (Q8KA12)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660473.1
- EnsemblBacteria:   EBBUCT00000000044
- GeneID:   1005932
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg115
- GeneTree:   EBGT00050000007833
- HOGENOM:   HBG750745
- OMA:   SGDTTWG
- ProtClustDB:   PRK10983
- BioCyc:   BAPH198804:BUSG115-MONOMER
- InterPro:   IPR002549
- PANTHER:   PTHR21716

Pfam domain/function: PF01594 UPF0118

EC number: NA

Molecular weight: Translated: 40870; Mature: 40870

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xbfedf64)-; HASH(0xba3349c)-; HASH(0xc1846ac)-; HASH(0xbff6bd4)-; HASH(0xad292c4)-; HASH(0xba67a44)-; HASH(0x40463d94)-; HASH(0x95c869c)-; HASH(0xba94738)-;

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNPKEKMDLSQFILSLIFIIAISATSFLIIQPFILGFSWASMIVIATWPLMLKMQKFLG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GKRLVAVIGMIIILLLLFIIPIVFLVNSLIKTSIPLIHWFSSNNLEFPELIWLQDIPIIG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHCCCCHHH
KKIFISYQELLDSDGGELIREIRPYMGRTTEFFIIQAKNCGLFIMHLTLMLLFSLLLYWN
HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHC
GEKISNSIRQFASRLSSRNGEAIVLLSVQAVRAVALGVVVTALIQAVLSGIGLLISGVPY
CHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
WTLLMILIVFSCLIQLGPLPILIPSVIWLYWNSNTTWGTLLLIWSCFVFILDNILRPFFI
HHHHHHHHHHHHHHHHCCCHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RIGSDLPTFLILLGVIGGLLAFGMIGLFIGPVVLVILYRLIVSWIYGISIASFLENTTLK
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SKSN
CCCH
>Mature Secondary Structure
MQNPKEKMDLSQFILSLIFIIAISATSFLIIQPFILGFSWASMIVIATWPLMLKMQKFLG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GKRLVAVIGMIIILLLLFIIPIVFLVNSLIKTSIPLIHWFSSNNLEFPELIWLQDIPIIG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHCCCCHHH
KKIFISYQELLDSDGGELIREIRPYMGRTTEFFIIQAKNCGLFIMHLTLMLLFSLLLYWN
HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHC
GEKISNSIRQFASRLSSRNGEAIVLLSVQAVRAVALGVVVTALIQAVLSGIGLLISGVPY
CHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
WTLLMILIVFSCLIQLGPLPILIPSVIWLYWNSNTTWGTLLLIWSCFVFILDNILRPFFI
HHHHHHHHHHHHHHHHCCCHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RIGSDLPTFLILLGVIGGLLAFGMIGLFIGPVVLVILYRLIVSWIYGISIASFLENTTLK
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SKSN
CCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12089438