Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
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Accession | NC_011593 |
Length | 2,832,748 |
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The map label for this gene is 213690951
Identifier: 213690951
GI number: 213690951
Start: 25646
End: 26365
Strand: Reverse
Name: 213690951
Synonym: Blon_0025
Alternate gene names: NA
Gene position: 26365-25646 (Counterclockwise)
Preceding gene: 213690952
Following gene: 213690950
Centisome position: 0.93
GC content: 67.08
Gene sequence:
>720_bases ATGAGCAATGAAGAGCAGCGGTCACGGACCGACGGACGCCAGCCGGTCGGCACGGTCGTCTTCGATTTCGATGGGACGAT CAGCCTGGGCGACGGGCCTGTGCGTTCCTACGCGCGCCATGCCTTCGCCCGGTTGCCCGCGGGGTTGCGCGAACGGGCCG TCAGGACGCTGGATCTCTATCTTGGCGGCGCCGTCACGGATGATGGCCGGCATTGGAACGACGGTTACGATGTGGTGAGC GACATGTGCGCGGGCCATGTGCCGGCGGATGGGTTGCAGCAGGCGTATCTTTCCAGCCGGGACGAGCTGGCCCGTGGTCT TGTCCATGTGGACATGCCGCAGGGTCTTCCCGGTTTCCTGGACGATCTGGGTTCGTTGGGCTGCGTTCGCGTGCTGTTGA CCAATTCGCCGCTGCATGGGGTGCGCGAGACCGTCGGACGGTTCGGGCTGGAGGGTCGTTTCGACCTGATCGTCGACGGG GCGGGCAAACCCGGACGCTGGGGCGATCATATCGCCGCGTTCGACCGTCTCGCGGGACGTGGGCGCCTGTTGAGCATCGG CGACCATTGGGACAACGACATCGCCCCGGTGCTCGCCGCGGGCCGCGAGGCCGCGTACATCGGCGGCACGGGCCGGCATG GCGGCGCGACGTACCGGACGGCGCTCCTTCCCGACATGTACGGGGCGATATTGGAGGGATGCGCGTCATGGGACAGGTGA
Upstream 100 bases:
>100_bases CGCGCCACGTCAAGCAGAGGAAGATGAACAGTAGGCCAACCATGTCGGAATTATGTTCAAAAGTCATTGAACGTTTTTCA TTTCGTGTTTTAATGGAGGC
Downstream 100 bases:
>100_bases ACGCGAACGGGCCGGCCGAATCGATCCTCGCCCGCATCCGGCTTGCGTTGGACGCGTTGGATCCGGCGCAGCGCAAGGTC GCGCGCTTCTTCCTGGAGAA
Product: Haloacid dehalogenase domain protein hydrolase
Products: NA
Alternate protein names: HAD Superfamily Hydrolase; Hydrolase/Phosphatase
Number of amino acids: Translated: 239; Mature: 238
Protein sequence:
>239_residues MSNEEQRSRTDGRQPVGTVVFDFDGTISLGDGPVRSYARHAFARLPAGLRERAVRTLDLYLGGAVTDDGRHWNDGYDVVS DMCAGHVPADGLQQAYLSSRDELARGLVHVDMPQGLPGFLDDLGSLGCVRVLLTNSPLHGVRETVGRFGLEGRFDLIVDG AGKPGRWGDHIAAFDRLAGRGRLLSIGDHWDNDIAPVLAAGREAAYIGGTGRHGGATYRTALLPDMYGAILEGCASWDR
Sequences:
>Translated_239_residues MSNEEQRSRTDGRQPVGTVVFDFDGTISLGDGPVRSYARHAFARLPAGLRERAVRTLDLYLGGAVTDDGRHWNDGYDVVS DMCAGHVPADGLQQAYLSSRDELARGLVHVDMPQGLPGFLDDLGSLGCVRVLLTNSPLHGVRETVGRFGLEGRFDLIVDG AGKPGRWGDHIAAFDRLAGRGRLLSIGDHWDNDIAPVLAAGREAAYIGGTGRHGGATYRTALLPDMYGAILEGCASWDR >Mature_238_residues SNEEQRSRTDGRQPVGTVVFDFDGTISLGDGPVRSYARHAFARLPAGLRERAVRTLDLYLGGAVTDDGRHWNDGYDVVSD MCAGHVPADGLQQAYLSSRDELARGLVHVDMPQGLPGFLDDLGSLGCVRVLLTNSPLHGVRETVGRFGLEGRFDLIVDGA GKPGRWGDHIAAFDRLAGRGRLLSIGDHWDNDIAPVLAAGREAAYIGGTGRHGGATYRTALLPDMYGAILEGCASWDR
Specific function: Unknown
COG id: COG1011
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25684; Mature: 25553
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNEEQRSRTDGRQPVGTVVFDFDGTISLGDGPVRSYARHAFARLPAGLRERAVRTLDLY CCCHHHHHHCCCCCCCEEEEEECCCEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH LGGAVTDDGRHWNDGYDVVSDMCAGHVPADGLQQAYLSSRDELARGLVHVDMPQGLPGFL CCCEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCEEEECCCCCCHHH DDLGSLGCVRVLLTNSPLHGVRETVGRFGLEGRFDLIVDGAGKPGRWGDHIAAFDRLAGR HHHCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCC GRLLSIGDHWDNDIAPVLAAGREAAYIGGTGRHGGATYRTALLPDMYGAILEGCASWDR CCEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SNEEQRSRTDGRQPVGTVVFDFDGTISLGDGPVRSYARHAFARLPAGLRERAVRTLDLY CCHHHHHHCCCCCCCEEEEEECCCEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH LGGAVTDDGRHWNDGYDVVSDMCAGHVPADGLQQAYLSSRDELARGLVHVDMPQGLPGFL CCCEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHCCEEEECCCCCCHHH DDLGSLGCVRVLLTNSPLHGVRETVGRFGLEGRFDLIVDGAGKPGRWGDHIAAFDRLAGR HHHCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCC GRLLSIGDHWDNDIAPVLAAGREAAYIGGTGRHGGATYRTALLPDMYGAILEGCASWDR CCEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA