Click here to switch to the map view.

The map label for this gene is xynB [H]

Identifier: 21244969

GI number: 21244969

Start: 5019226

End: 5020236

Strand: Reverse

Name: xynB [H]

Synonym: XAC4252

Alternate gene names: 21244969

Gene position: 5020236-5019226 (Counterclockwise)

Preceding gene: 21244970

Following gene: 21244968

Centisome position: 97.0

GC content: 61.62

Gene sequence:

>1011_bases
GTGACTGCTTCGCTCACTCATCGAGGATGCCAACATGATGAAACTCCGTTATCCGCTCACGCTTGCGTTGTTGCTGGGCG
CTTGTGCGTCCGCTGTCGCCGGGCCTATCGCTGCCGGCAAGCAACGGGTCCTGGGCAGCGCCTACAGCCCACGGCAAGCG
CAGGCTTCACCAACTACTGGAACGCCGACGTTTCCGAAAATGCGGGCAAATGGGGCAGCGTCGAAGCCGTGCGCGGACAG
ATGAACTGGGGCCCGCTCGACGAGGCTTACCAGCTGGCCAAGCGCAACCATATGCAGTTCCAGTTCCATGTCGGACTCTG
GGGGGCCCAGCAGCCGACATGGGTACGCAACCTGCCGCCAAACGAGCAGCTTGCTGCGATCGAGCACTGGTTTGCGGCGA
TTGCGCAGCGCTACCCCGACATCGACCTGATGCAGGTGGCCAACGAGACGCTGCCGGGTCACAACCAACCGGACAATCGC
CGCGGCGATACGGGTAATTATCTCCAGGCACTGGGCGGCACCGGGGCGACCGGCGTGGACTGGGTGCTTGAGGCATTCCG
CCTGGCACGCACGTATTTCCCCCATACCAAGCTGATGATCAACGACTACAACGTCACCGAGTACAACGACCAAGCCAGGC
AGTACCTGCACACCATCCAGCTGCTGCAGCAAGAACACCTGATCGATGCGATCGGTATCCAGGGGCACCTCTCGAGCAAC
GGTCCTTCAGTTTCGGTGCAGCGTGCCAACCTCGACCTGTTGGCATCCACCGGCCTGCCGATCTACATCACCGAGTTCGA
CCTGGATGGGCGTACCGACGCTCAGCAGTTGGCAGCCTGGCAGCGCTTCTTCCCGATGTTCTGGGAGCACCCGGCCGTGC
GTGGCGTGAACCTTTGGGGTTTCCGTCACGGTCTGTGGCGCGAAAATGAAGGTGCTTATCTGATCAATTACGACGGCAGC
GAACGCCCGGCATTGACCTGGCTACGCAGCTACGTCGCCAGCAAGCCCTGA

Upstream 100 bases:

>100_bases
CGACGGCAGCCGGTGCGAGTGGAGCAGCCGGCCTAGACGCGGTTCCAGGTGTCTGCACTTTGGCGTCGATCGGACGCACG
TCAGCGCACCTGTCCTTTCC

Downstream 100 bases:

>100_bases
CCAGGGTTCCCATTTATTGTCCATAGGGCTGATATCGATCATGCGTTCTTCCGTGTTGTCCTTGCATCCCGATCGTTTGC
TGCCGGCCGATCCCGGCACG

Product: xylanase

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MTASLTHRGCQHDETPLSAHACVVAGRLCVRCRRAYRCRQATGPGQRLQPTASAGFTNYWNADVSENAGKWGSVEAVRGQ
MNWGPLDEAYQLAKRNHMQFQFHVGLWGAQQPTWVRNLPPNEQLAAIEHWFAAIAQRYPDIDLMQVANETLPGHNQPDNR
RGDTGNYLQALGGTGATGVDWVLEAFRLARTYFPHTKLMINDYNVTEYNDQARQYLHTIQLLQQEHLIDAIGIQGHLSSN
GPSVSVQRANLDLLASTGLPIYITEFDLDGRTDAQQLAAWQRFFPMFWEHPAVRGVNLWGFRHGLWRENEGAYLINYDGS
ERPALTWLRSYVASKP

Sequences:

>Translated_336_residues
MTASLTHRGCQHDETPLSAHACVVAGRLCVRCRRAYRCRQATGPGQRLQPTASAGFTNYWNADVSENAGKWGSVEAVRGQ
MNWGPLDEAYQLAKRNHMQFQFHVGLWGAQQPTWVRNLPPNEQLAAIEHWFAAIAQRYPDIDLMQVANETLPGHNQPDNR
RGDTGNYLQALGGTGATGVDWVLEAFRLARTYFPHTKLMINDYNVTEYNDQARQYLHTIQLLQQEHLIDAIGIQGHLSSN
GPSVSVQRANLDLLASTGLPIYITEFDLDGRTDAQQLAAWQRFFPMFWEHPAVRGVNLWGFRHGLWRENEGAYLINYDGS
ERPALTWLRSYVASKP
>Mature_335_residues
TASLTHRGCQHDETPLSAHACVVAGRLCVRCRRAYRCRQATGPGQRLQPTASAGFTNYWNADVSENAGKWGSVEAVRGQM
NWGPLDEAYQLAKRNHMQFQFHVGLWGAQQPTWVRNLPPNEQLAAIEHWFAAIAQRYPDIDLMQVANETLPGHNQPDNRR
GDTGNYLQALGGTGATGVDWVLEAFRLARTYFPHTKLMINDYNVTEYNDQARQYLHTIQLLQQEHLIDAIGIQGHLSSNG
PSVSVQRANLDLLASTGLPIYITEFDLDGRTDAQQLAAWQRFFPMFWEHPAVRGVNLWGFRHGLWRENEGAYLINYDGSE
RPALTWLRSYVASKP

Specific function: Xylanase B contributes to hydrolyze hemicellulose, the major component of plant cell-walls [H]

COG id: COG3693

COG function: function code G; Beta-1,4-xylanase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CBM6 (carbohydrate binding type-6) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008965
- InterPro:   IPR005084
- InterPro:   IPR012291
- InterPro:   IPR018366
- InterPro:   IPR001919
- InterPro:   IPR008979
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00553 CBM_2; PF03422 CBM_6; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 37986; Mature: 37855

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASLTHRGCQHDETPLSAHACVVAGRLCVRCRRAYRCRQATGPGQRLQPTASAGFTNYW
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
NADVSENAGKWGSVEAVRGQMNWGPLDEAYQLAKRNHMQFQFHVGLWGAQQPTWVRNLPP
CCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCEECCCCC
NEQLAAIEHWFAAIAQRYPDIDLMQVANETLPGHNQPDNRRGDTGNYLQALGGTGATGVD
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHH
WVLEAFRLARTYFPHTKLMINDYNVTEYNDQARQYLHTIQLLQQEHLIDAIGIQGHLSSN
HHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
GPSVSVQRANLDLLASTGLPIYITEFDLDGRTDAQQLAAWQRFFPMFWEHPAVRGVNLWG
CCEEEEEECCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEHH
FRHGLWRENEGAYLINYDGSERPALTWLRSYVASKP
HHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
TASLTHRGCQHDETPLSAHACVVAGRLCVRCRRAYRCRQATGPGQRLQPTASAGFTNYW
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
NADVSENAGKWGSVEAVRGQMNWGPLDEAYQLAKRNHMQFQFHVGLWGAQQPTWVRNLPP
CCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCEECCCCC
NEQLAAIEHWFAAIAQRYPDIDLMQVANETLPGHNQPDNRRGDTGNYLQALGGTGATGVD
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHH
WVLEAFRLARTYFPHTKLMINDYNVTEYNDQARQYLHTIQLLQQEHLIDAIGIQGHLSSN
HHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
GPSVSVQRANLDLLASTGLPIYITEFDLDGRTDAQQLAAWQRFFPMFWEHPAVRGVNLWG
CCEEEEEECCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEHH
FRHGLWRENEGAYLINYDGSERPALTWLRSYVASKP
HHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2125205 [H]