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The map label for this gene is yodB [C]

Identifier: 21244709

GI number: 21244709

Start: 4682701

End: 4683243

Strand: Direct

Name: yodB [C]

Synonym: XAC3991

Alternate gene names: 21244709

Gene position: 4682701-4683243 (Clockwise)

Preceding gene: 21244708

Following gene: 21244713

Centisome position: 90.48

GC content: 67.59

Gene sequence:

>543_bases
ATGAGCCGCCGCACCCACTTCAATCTGCCGGCGCGCGTGCTGCATTGGCTGATGGCCGCGATGATCCTGACCATGCTGTT
CGTCGGTGTCGGCATGGTAGCCTCGGTGACGCAGCGGCCGTGGCTGATCGATCTGCATCGCCCGCTGGGCATCGCGATCC
TGATCCTGGCGATGCTGCGCTTGATCAACCGTTTGCGCAATCGGCCGCCGCCGCTGCCGGCCGACCTGCCGGCATGGCAG
AAGGCCGCGGCGATCGCCTCGCACTGGCTGCTGTATGCGTTGATGCTGGGCATGCCGTTGATCGGCTGGGCGATGTTGTC
GGCCGGCGGCTACCCGATCGTGCTGTGGCCGGGCGCGAACCTGCCGCCGATCGCACCGCACGACCCTGCGCTGTACGCCT
GGCTGCGCAGCGCGCACGGTTGGCTGGCGTATCTGTTATTTGCCACCGTGTTGGGGCATCTGAGCGCGGCGTTGTTCCAT
GCCTGGGTGCGCCGCGACGGGGTGTTTTCCAGCATGGCGCGTGGGGAGCGGTCTGCGCGGTGA

Upstream 100 bases:

>100_bases
TGGCGGCGCGCTCGTCGGTGTATTCGCAATCGTTCAATCGCCGCGAACACGAGATCGCCAATGGCACGGGCAGCGCCGCC
ACCGGCCAGGGAGCACGCCA

Downstream 100 bases:

>100_bases
TGGGTGGGTGTTGGCACCCTCTCCCGCCGGGACATTGTCCTCCTTTACGGGGGAGAAGGTGCCCCGCAGGGGCGGATGAG
GGTGCGGGCAAAGCATCGGG

Product: cytochrome B561

Products: NA

Alternate protein names: Cytochrome; Type-B Cytochrome; Cytochrome B-Like Protein; Nickel-Dependent Hydrogenase

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MSRRTHFNLPARVLHWLMAAMILTMLFVGVGMVASVTQRPWLIDLHRPLGIAILILAMLRLINRLRNRPPPLPADLPAWQ
KAAAIASHWLLYALMLGMPLIGWAMLSAGGYPIVLWPGANLPPIAPHDPALYAWLRSAHGWLAYLLFATVLGHLSAALFH
AWVRRDGVFSSMARGERSAR

Sequences:

>Translated_180_residues
MSRRTHFNLPARVLHWLMAAMILTMLFVGVGMVASVTQRPWLIDLHRPLGIAILILAMLRLINRLRNRPPPLPADLPAWQ
KAAAIASHWLLYALMLGMPLIGWAMLSAGGYPIVLWPGANLPPIAPHDPALYAWLRSAHGWLAYLLFATVLGHLSAALFH
AWVRRDGVFSSMARGERSAR
>Mature_179_residues
SRRTHFNLPARVLHWLMAAMILTMLFVGVGMVASVTQRPWLIDLHRPLGIAILILAMLRLINRLRNRPPPLPADLPAWQK
AAAIASHWLLYALMLGMPLIGWAMLSAGGYPIVLWPGANLPPIAPHDPALYAWLRSAHGWLAYLLFATVLGHLSAALFHA
WVRRDGVFSSMARGERSAR

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082013, Length=178, Percent_Identity=28.0898876404494, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20045; Mature: 19914

Theoretical pI: Translated: 12.21; Mature: 12.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRTHFNLPARVLHWLMAAMILTMLFVGVGMVASVTQRPWLIDLHRPLGIAILILAMLR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHH
LINRLRNRPPPLPADLPAWQKAAAIASHWLLYALMLGMPLIGWAMLSAGGYPIVLWPGAN
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
LPPIAPHDPALYAWLRSAHGWLAYLLFATVLGHLSAALFHAWVRRDGVFSSMARGERSAR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCC
>Mature Secondary Structure 
SRRTHFNLPARVLHWLMAAMILTMLFVGVGMVASVTQRPWLIDLHRPLGIAILILAMLR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHH
LINRLRNRPPPLPADLPAWQKAAAIASHWLLYALMLGMPLIGWAMLSAGGYPIVLWPGAN
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
LPPIAPHDPALYAWLRSAHGWLAYLLFATVLGHLSAALFHAWVRRDGVFSSMARGERSAR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA