Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
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Accession | NC_003919 |
Length | 5,175,554 |
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The map label for this gene is 21244270
Identifier: 21244270
GI number: 21244270
Start: 4189722
End: 4191605
Strand: Reverse
Name: 21244270
Synonym: XAC3545
Alternate gene names: NA
Gene position: 4191605-4189722 (Counterclockwise)
Preceding gene: 21244271
Following gene: 21244269
Centisome position: 80.99
GC content: 67.73
Gene sequence:
>1884_bases GTGATCGACAAGAATTTCCGTCTCAACCCGCTGACCGGCGCCATCCTGATGATGGCCCTCGGTGCGTCTGGCACGTTGGC TGCCGCCCCCAAACTGCTGGTCAAGGAACCGACCCAGGCAGCCCCGGCCGGCGCAGCGTTCGGTAGCCGGTTGATCGTGC GCTACAAGGACAGCACCGCCGCTGCGACCGATCGCAGCAGCAAGCTGAGCGCCGTGCAGGCCGCGGTGGGCCGCGTTGGC GTCGGTACTGGCGCGCGCAGCAGCGCTGCCGCCGCCAAGGCCACGTATGTGCGCAAGCTGGGCATCGGCTCGGACCTGAT CAAGCTGTCGAGCACGCTGACCGCCGCGCAGGTGGACAAGGTGGTGGTCGAGCTCAAGAACGACCCATCCGTGGCCGACG TGCAGATCGACCGCATGCTGCGCCCGATCGACATCAGCAAGAGCGTTCCTGCCACCGACGTGAGCCCGCAGCTGGTTCCC AACGACCCGCTGTACGCCCAGTACCAGTGGCACCTGAGCAACCCCAATGGCGGCATCAATGCACCGGCTGCATGGGATCT GTCGCAGGGCGCAGGCGTGGTGGTCGCGGTACTGGATACCGGCATCCTGCCGGGCCATCCGGATTTCGCCGGCAACATCC TGCAGGGCTACGACTTCATCACCGACGCCGAAGTCTCGCGTCGTCCCACCGATGCGCGCGTGCCGGGCGCACTCGATTAT GGCGACTGGGAAGAGGCCGACAACGTCTGCTACGCGGGCTCACAGGCGCAGGAAAGTTCCTGGCACGGCACCCATGTCTC GGGCACCGTGGCCGAGGCGACCAATAACGGCGTGGGCATGGCAGGCGTCGCGCCGAAGGCGACCATCCTGCCGGTGCGCG TGCTCGGTCGTTGCGGCGGCTACACCTCCGACATCGCCGATGCGATCGTGTGGGCCTCCGGCGGCAGCGTCGACGGCGTG CCGGCCAACAGCAATCCGGCCGAAGTGATCAACATGAGCCTCGGTGGCGGCGAACCCTGCGATTCGGCCACCCAGCTGGC GATCAACAGCGCGGTGTCGCGCGGCACCACCGTGGTGGTTGCAGCCGGCAACAGCAGCGAAGATGCAGCCAACCATTCGC CGGCCAGCTGCAACAACACCATCACCGTTGGCGCCACGCGCATCACCGGCGGCATCGCCTACTACTCCAACTACGGCAGC AAGGTCGACCTCTCTGGACCGGGCGGCGGCGGTAGCGTGGACGGCAACCCGGGCGGTTACATCTGGCAGGCCGGCTACAC CGGTGCGACCACGCCGACCTCGGGTAGCTATACCTATATGGGGCTAGGCGGCACCTCGATGGCCTCGCCGCACGTGGCTG GCGTCGTGGCGCTGGTGCAGAGCGCAGCCATCGGGCTGGGCGATGGCCCGCTGACCCCGGCCGCGGTCGAAGCCCTGCTC AAGCAGACCAGCCGCCGCTTCCCGGTGACCCCGCCGGCCAGCACCCCGATCGGCAGCGGCATCGTCGACGCCAAGGCCGC GCTGGAAGCCGTGCTTGAGGAGCCGTGCGACCCGGCCACCGAGAGCTGCGCGCCGAGCGCCATCGAGCTCACCAACAAGG CACCTGTTGCTGGCTTGAGCGGTGCCGCCGGCGGCTCCACGCTATACAGCTTCGAGGCCAAGGCCGGCGCCGTGCTCAGC TTCATGACCTACGGCGGCACCGGCGATGTGTCGATGTACGTCAGCTTTGAGGCCGAGCCCAGCGCAACCAGCTACGACGC CAAGTCGACCCGTCCGGGCAACAGCGAAACCGTGCGTTTCACTGCCCCCAAGGCCGGCACCTACTACATCAAGTTGGTCG GCGCGGCGAGCTACGCGAAGCTGACGCTCGTTGCACGACAGTGA
Upstream 100 bases:
>100_bases GGGTAGCCGGCAAGGACGCAGCGCACCGCACCGCGGCTACGCAGCGATTGCGCCGGCTGCGCCAAGCCTGATTCACGAAA AATACGAAGAGGACTTCACC
Downstream 100 bases:
>100_bases GTAGCGAAATAGTGTGACCGATGCCCCCGGCCAATCGCCGGGGGCATTGTTTTTCAGGGCGATTCAGATGCGTGCGGTTG ATCGTCGCGGCAAACTGCTA
Product: protease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 627; Mature: 627
Protein sequence:
>627_residues MIDKNFRLNPLTGAILMMALGASGTLAAAPKLLVKEPTQAAPAGAAFGSRLIVRYKDSTAAATDRSSKLSAVQAAVGRVG VGTGARSSAAAAKATYVRKLGIGSDLIKLSSTLTAAQVDKVVVELKNDPSVADVQIDRMLRPIDISKSVPATDVSPQLVP NDPLYAQYQWHLSNPNGGINAPAAWDLSQGAGVVVAVLDTGILPGHPDFAGNILQGYDFITDAEVSRRPTDARVPGALDY GDWEEADNVCYAGSQAQESSWHGTHVSGTVAEATNNGVGMAGVAPKATILPVRVLGRCGGYTSDIADAIVWASGGSVDGV PANSNPAEVINMSLGGGEPCDSATQLAINSAVSRGTTVVVAAGNSSEDAANHSPASCNNTITVGATRITGGIAYYSNYGS KVDLSGPGGGGSVDGNPGGYIWQAGYTGATTPTSGSYTYMGLGGTSMASPHVAGVVALVQSAAIGLGDGPLTPAAVEALL KQTSRRFPVTPPASTPIGSGIVDAKAALEAVLEEPCDPATESCAPSAIELTNKAPVAGLSGAAGGSTLYSFEAKAGAVLS FMTYGGTGDVSMYVSFEAEPSATSYDAKSTRPGNSETVRFTAPKAGTYYIKLVGAASYAKLTLVARQ
Sequences:
>Translated_627_residues MIDKNFRLNPLTGAILMMALGASGTLAAAPKLLVKEPTQAAPAGAAFGSRLIVRYKDSTAAATDRSSKLSAVQAAVGRVG VGTGARSSAAAAKATYVRKLGIGSDLIKLSSTLTAAQVDKVVVELKNDPSVADVQIDRMLRPIDISKSVPATDVSPQLVP NDPLYAQYQWHLSNPNGGINAPAAWDLSQGAGVVVAVLDTGILPGHPDFAGNILQGYDFITDAEVSRRPTDARVPGALDY GDWEEADNVCYAGSQAQESSWHGTHVSGTVAEATNNGVGMAGVAPKATILPVRVLGRCGGYTSDIADAIVWASGGSVDGV PANSNPAEVINMSLGGGEPCDSATQLAINSAVSRGTTVVVAAGNSSEDAANHSPASCNNTITVGATRITGGIAYYSNYGS KVDLSGPGGGGSVDGNPGGYIWQAGYTGATTPTSGSYTYMGLGGTSMASPHVAGVVALVQSAAIGLGDGPLTPAAVEALL KQTSRRFPVTPPASTPIGSGIVDAKAALEAVLEEPCDPATESCAPSAIELTNKAPVAGLSGAAGGSTLYSFEAKAGAVLS FMTYGGTGDVSMYVSFEAEPSATSYDAKSTRPGNSETVRFTAPKAGTYYIKLVGAASYAKLTLVARQ >Mature_627_residues MIDKNFRLNPLTGAILMMALGASGTLAAAPKLLVKEPTQAAPAGAAFGSRLIVRYKDSTAAATDRSSKLSAVQAAVGRVG VGTGARSSAAAAKATYVRKLGIGSDLIKLSSTLTAAQVDKVVVELKNDPSVADVQIDRMLRPIDISKSVPATDVSPQLVP NDPLYAQYQWHLSNPNGGINAPAAWDLSQGAGVVVAVLDTGILPGHPDFAGNILQGYDFITDAEVSRRPTDARVPGALDY GDWEEADNVCYAGSQAQESSWHGTHVSGTVAEATNNGVGMAGVAPKATILPVRVLGRCGGYTSDIADAIVWASGGSVDGV PANSNPAEVINMSLGGGEPCDSATQLAINSAVSRGTTVVVAAGNSSEDAANHSPASCNNTITVGATRITGGIAYYSNYGS KVDLSGPGGGGSVDGNPGGYIWQAGYTGATTPTSGSYTYMGLGGTSMASPHVAGVVALVQSAAIGLGDGPLTPAAVEALL KQTSRRFPVTPPASTPIGSGIVDAKAALEAVLEEPCDPATESCAPSAIELTNKAPVAGLSGAAGGSTLYSFEAKAGAVLS FMTYGGTGDVSMYVSFEAEPSATSYDAKSTRPGNSETVRFTAPKAGTYYIKLVGAASYAKLTLVARQ
Specific function: Unknown
COG id: COG1404
COG function: function code O; Subtilisin-like serine proteases
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S8 family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6320775, Length=337, Percent_Identity=29.673590504451, Blast_Score=109, Evalue=2e-24, Organism=Saccharomyces cerevisiae, GI6324576, Length=341, Percent_Identity=28.1524926686217, Blast_Score=103, Evalue=8e-23, Organism=Saccharomyces cerevisiae, GI6319893, Length=281, Percent_Identity=29.1814946619217, Blast_Score=79, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007280 - InterPro: IPR000209 - InterPro: IPR022398 - InterPro: IPR015500 [H]
Pfam domain/function: PF00082 Peptidase_S8; PF04151 PPC [H]
EC number: NA
Molecular weight: Translated: 63397; Mature: 63397
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: PS00136 SUBTILASE_ASP ; PS00138 SUBTILASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDKNFRLNPLTGAILMMALGASGTLAAAPKLLVKEPTQAAPAGAAFGSRLIVRYKDSTA CCCCCCCCCCHHHHHHHHHHCCCCCHHHCCHHEECCCCCCCCCCCCCCCEEEEEECCCCC AATDRSSKLSAVQAAVGRVGVGTGARSSAAAAKATYVRKLGIGSDLIKLSSTLTAAQVDK CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCE VVVELKNDPSVADVQIDRMLRPIDISKSVPATDVSPQLVPNDPLYAQYQWHLSNPNGGIN EEEEECCCCCEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCC APAAWDLSQGAGVVVAVLDTGILPGHPDFAGNILQGYDFITDAEVSRRPTDARVPGALDY CCCCEECCCCCCEEEEEEECCCCCCCCCCCCCHHHCCCCEECCHHHCCCCCCCCCCCCCC GDWEEADNVCYAGSQAQESSWHGTHVSGTVAEATNNGVGMAGVAPKATILPVRVLGRCGG CCCCCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCCEECCCCCCCEEEHHHHHHHCCC YTSDIADAIVWASGGSVDGVPANSNPAEVINMSLGGGEPCDSATQLAINSAVSRGTTVVV CHHHHHHHEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEE AAGNSSEDAANHSPASCNNTITVGATRITGGIAYYSNYGSKVDLSGPGGGGSVDGNPGGY ECCCCCCCCCCCCCCCCCCEEEEEEEEHHCCEEEEECCCCEEEECCCCCCCCCCCCCCCE IWQAGYTGATTPTSGSYTYMGLGGTSMASPHVAGVVALVQSAAIGLGDGPLTPAAVEALL EEECCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH KQTSRRFPVTPPASTPIGSGIVDAKAALEAVLEEPCDPATESCAPSAIELTNKAPVAGLS HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCEEEECCCCCCCCCC GAAGGSTLYSFEAKAGAVLSFMTYGGTGDVSMYVSFEAEPSATSYDAKSTRPGNSETVRF CCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEE TAPKAGTYYIKLVGAASYAKLTLVARQ ECCCCCEEEEEEEECCCEEEEEEEECC >Mature Secondary Structure MIDKNFRLNPLTGAILMMALGASGTLAAAPKLLVKEPTQAAPAGAAFGSRLIVRYKDSTA CCCCCCCCCCHHHHHHHHHHCCCCCHHHCCHHEECCCCCCCCCCCCCCCEEEEEECCCCC AATDRSSKLSAVQAAVGRVGVGTGARSSAAAAKATYVRKLGIGSDLIKLSSTLTAAQVDK CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCE VVVELKNDPSVADVQIDRMLRPIDISKSVPATDVSPQLVPNDPLYAQYQWHLSNPNGGIN EEEEECCCCCEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCC APAAWDLSQGAGVVVAVLDTGILPGHPDFAGNILQGYDFITDAEVSRRPTDARVPGALDY CCCCEECCCCCCEEEEEEECCCCCCCCCCCCCHHHCCCCEECCHHHCCCCCCCCCCCCCC GDWEEADNVCYAGSQAQESSWHGTHVSGTVAEATNNGVGMAGVAPKATILPVRVLGRCGG CCCCCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCCEECCCCCCCEEEHHHHHHHCCC YTSDIADAIVWASGGSVDGVPANSNPAEVINMSLGGGEPCDSATQLAINSAVSRGTTVVV CHHHHHHHEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEE AAGNSSEDAANHSPASCNNTITVGATRITGGIAYYSNYGSKVDLSGPGGGGSVDGNPGGY ECCCCCCCCCCCCCCCCCCEEEEEEEEHHCCEEEEECCCCEEEECCCCCCCCCCCCCCCE IWQAGYTGATTPTSGSYTYMGLGGTSMASPHVAGVVALVQSAAIGLGDGPLTPAAVEALL EEECCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH KQTSRRFPVTPPASTPIGSGIVDAKAALEAVLEEPCDPATESCAPSAIELTNKAPVAGLS HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCEEEECCCCCCCCCC GAAGGSTLYSFEAKAGAVLSFMTYGGTGDVSMYVSFEAEPSATSYDAKSTRPGNSETVRF CCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEE TAPKAGTYYIKLVGAASYAKLTLVARQ ECCCCCEEEEEEEECCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2187155; 12024217 [H]