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The map label for this gene is xpsF [H]

Identifier: 21244268

GI number: 21244268

Start: 4186472

End: 4187647

Strand: Reverse

Name: xpsF [H]

Synonym: XAC3543

Alternate gene names: 21244268

Gene position: 4187647-4186472 (Counterclockwise)

Preceding gene: 21244269

Following gene: 21244267

Centisome position: 80.91

GC content: 64.71

Gene sequence:

>1176_bases
ATGCTCGACGGCCAGATGGAAGCGGCCAGCGATGCCGAGGTGGCGTTGCGTCTGCAGGAACAGGGCCATCTGCCGGTGGA
AACGCGCCTGGCCACCGGCGAAAACGATTCGCCGTCGCTGCGCATGCTGCTGCGCAAGAAGCCGTTCGACAATGCGGCGC
TGGTGCAATTCACCCAGCAACTGGCGACGTTGATCGGCGCGGGACAACCGCTGGACCGTGCGCTGTCGATTCTGATGGAT
CTGCCCGAAGACGAAAAAAGCCGGCGGGTGATCGGCGATGTGCGCGATACCGTGCGCGGTGGTGCGCCATTGTCGTCCGC
ACTCGAGCGCCAGCATGGGCTGTTTTCCAAGCTGTACATCAACATGGTGCGCGCGGGCGAAGCCGGCGGCAGCATGCAGG
ACACGCTGCAGCGGCTGGCCGATTATCTGGAGCGCAGCCGCGCGCTGAGGGGCAAGGTGATCAACGCGCTGATCTACCCG
GCGATCCTGCTGGCGGTGGTGGGCTGTGCGTTGCTGTTCCTGCTCGGTTATGTGGTGCCGCAATTTGCGCAGATGTACGA
AAGCCTGGATGTGGCGCTGCCGTGGTTTACCCAGGCGGTGTTGAGCGTGGGCCTGCTGGTGCGCGACTGGTGGATCGTGC
TGATCGTCGTGCCGGGCGTGCTGGGGCTATGGCTGGATCGCAAGCGTCGCAATGCCGCATTCCGTGCATCGCTGGACCAA
TGGCTGCTGCGCCAGAAGGTGGTCGGCAGCCTGATCGCCCGGCTGGAAACCGCACGCCTGACGCGCACCTTGGGCACCTT
GCTGCGCAATGGCGTGCCGCTGCTGGCGGCGATCGGCATCGCGCGCAACGTGATGTCCAATCTGGCCTTGGTGGAGGATG
TTGCCAATGCGGCCGACGACGTCAAGAACGGCCATGGCCTGTCGATGTCGCTGGCACGCGGCAAGCGCTTTCCGCGGCTG
GCGCTGCAGATGATCCAGGTGGGCGAAGAGTCCGGCGCACTGGACACGATGCTGCTCAAGACCGCCGACACCTTCGAGCT
GGAAACCGCGCAGGCCATCGACCGCGCACTGGCCGCGCTGGTGCCGTTCATCACGCTGGTGCTGGCCTCGGTGGTGGGGC
TTGTCATCATTTCGGTCCTCGTCCCGCTGTATGACCTTACCAATGCAATCGGCTGA

Upstream 100 bases:

>100_bases
GCGGTGTGCTTTTCCCGATTCCCGATTCCCGATTCCCCAATCCCGGGCTCCCAGCCTGATGCCCCTCTACCGCTACAAAG
CGCTCGACGCCCACGGCGAA

Downstream 100 bases:

>100_bases
GAGTGCAGGTCAGTGCAACGGTGCAGGCGTCGGGCGAGAACAGCCTGTGGTCCGAATCGGCGTGGAGCGCTCGTACACTG
CACATCCCGCGCGCGTGCGG

Product: general secretion pathway protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MLDGQMEAASDAEVALRLQEQGHLPVETRLATGENDSPSLRMLLRKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMD
LPEDEKSRRVIGDVRDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVINALIYP
AILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWIVLIVVPGVLGLWLDRKRRNAAFRASLDQ
WLLRQKVVGSLIARLETARLTRTLGTLLRNGVPLLAAIGIARNVMSNLALVEDVANAADDVKNGHGLSMSLARGKRFPRL
ALQMIQVGEESGALDTMLLKTADTFELETAQAIDRALAALVPFITLVLASVVGLVIISVLVPLYDLTNAIG

Sequences:

>Translated_391_residues
MLDGQMEAASDAEVALRLQEQGHLPVETRLATGENDSPSLRMLLRKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMD
LPEDEKSRRVIGDVRDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVINALIYP
AILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWIVLIVVPGVLGLWLDRKRRNAAFRASLDQ
WLLRQKVVGSLIARLETARLTRTLGTLLRNGVPLLAAIGIARNVMSNLALVEDVANAADDVKNGHGLSMSLARGKRFPRL
ALQMIQVGEESGALDTMLLKTADTFELETAQAIDRALAALVPFITLVLASVVGLVIISVLVPLYDLTNAIG
>Mature_391_residues
MLDGQMEAASDAEVALRLQEQGHLPVETRLATGENDSPSLRMLLRKKPFDNAALVQFTQQLATLIGAGQPLDRALSILMD
LPEDEKSRRVIGDVRDTVRGGAPLSSALERQHGLFSKLYINMVRAGEAGGSMQDTLQRLADYLERSRALRGKVINALIYP
AILLAVVGCALLFLLGYVVPQFAQMYESLDVALPWFTQAVLSVGLLVRDWWIVLIVVPGVLGLWLDRKRRNAAFRASLDQ
WLLRQKVVGSLIARLETARLTRTLGTLLRNGVPLLAAIGIARNVMSNLALVEDVANAADDVKNGHGLSMSLARGKRFPRL
ALQMIQVGEESGALDTMLLKTADTFELETAQAIDRALAALVPFITLVLASVVGLVIISVLVPLYDLTNAIG

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=392, Percent_Identity=32.9081632653061, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI1786295, Length=388, Percent_Identity=24.7422680412371, Blast_Score=122, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 42560; Mature: 42560

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDGQMEAASDAEVALRLQEQGHLPVETRLATGENDSPSLRMLLRKKPFDNAALVQFTQQ
CCCCCCCCCCCHHHHHHHHHCCCCCHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHH
LATLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDTVRGGAPLSSALERQHGLFSKLYI
HHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
NMVRAGEAGGSMQDTLQRLADYLERSRALRGKVINALIYPAILLAVVGCALLFLLGYVVP
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QFAQMYESLDVALPWFTQAVLSVGLLVRDWWIVLIVVPGVLGLWLDRKRRNAAFRASLDQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLLRQKVVGSLIARLETARLTRTLGTLLRNGVPLLAAIGIARNVMSNLALVEDVANAADD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKNGHGLSMSLARGKRFPRLALQMIQVGEESGALDTMLLKTADTFELETAQAIDRALAAL
CCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHH
VPFITLVLASVVGLVIISVLVPLYDLTNAIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLDGQMEAASDAEVALRLQEQGHLPVETRLATGENDSPSLRMLLRKKPFDNAALVQFTQQ
CCCCCCCCCCCHHHHHHHHHCCCCCHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHH
LATLIGAGQPLDRALSILMDLPEDEKSRRVIGDVRDTVRGGAPLSSALERQHGLFSKLYI
HHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
NMVRAGEAGGSMQDTLQRLADYLERSRALRGKVINALIYPAILLAVVGCALLFLLGYVVP
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QFAQMYESLDVALPWFTQAVLSVGLLVRDWWIVLIVVPGVLGLWLDRKRRNAAFRASLDQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLLRQKVVGSLIARLETARLTRTLGTLLRNGVPLLAAIGIARNVMSNLALVEDVANAADD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKNGHGLSMSLARGKRFPRLALQMIQVGEESGALDTMLLKTADTFELETAQAIDRALAAL
CCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHH
VPFITLVLASVVGLVIISVLVPLYDLTNAIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1944223; 12024217 [H]