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The map label for this gene is rpoZ

Identifier: 21244119

GI number: 21244119

Start: 4002112

End: 4002411

Strand: Reverse

Name: rpoZ

Synonym: XAC3394

Alternate gene names: 21244119

Gene position: 4002411-4002112 (Counterclockwise)

Preceding gene: 21244120

Following gene: 21244118

Centisome position: 77.33

GC content: 62.33

Gene sequence:

>300_bases
ATGGCCCGCATTACCGTAGAAGATTGCCTGGAAGTCGTGAACAACCGTTTTGAGCTGGTCATGATGGCCTCCAAGCGCGC
CCGTCAGCTCGCCAACGGCGTGCAGCCGCTGATCGAGAATGCCGACGCCAGCGACAAGCCCACCGTGATGGCACTGCGCG
AGATCGCCGCACGCCGGATCGACAACGCGCTGATCGATGAAGTCGAGAAGGCCGAACGCGAGCGTGCCGAACGCGAAGCG
CTGGAATGGGCCGCCGCCGAAGTGGTCGCCGACGAAGACATGTCCAAGAACGACGATTGA

Upstream 100 bases:

>100_bases
AACTGAATGGGTGGCGGTTGCTGCGACGCCGGCCGGAGCGTACACTCCGCCCCCTTTCCCTCATTCGATGCGCGGCCGTC
GCTGGTCGCCGGGAGCCCGC

Downstream 100 bases:

>100_bases
TTTCCGGCATCGCTGCGATCGATCAGAACAGCCCGCCTCGACGCGGGCTGTTTTCGTTTTCGGTCCCGGCAATACGCCTG
CGTGTGCAAATGTTTGCCGA

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 99; Mature: 98

Protein sequence:

>99_residues
MARITVEDCLEVVNNRFELVMMASKRARQLANGVQPLIENADASDKPTVMALREIAARRIDNALIDEVEKAERERAEREA
LEWAAAEVVADEDMSKNDD

Sequences:

>Translated_99_residues
MARITVEDCLEVVNNRFELVMMASKRARQLANGVQPLIENADASDKPTVMALREIAARRIDNALIDEVEKAERERAEREA
LEWAAAEVVADEDMSKNDD
>Mature_98_residues
ARITVEDCLEVVNNRFELVMMASKRARQLANGVQPLIENADASDKPTVMALREIAARRIDNALIDEVEKAERERAEREAL
EWAAAEVVADEDMSKNDD

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=67, Percent_Identity=47.7611940298507, Blast_Score=61, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_XANAC (P66732)

Other databases:

- EMBL:   AE008923
- RefSeq:   NP_643701.1
- GeneID:   1157465
- GenomeReviews:   AE008923_GR
- KEGG:   xac:XAC3394
- HOGENOM:   HBG742204
- OMA:   EENDKYT
- ProtClustDB:   PRK00392
- BioCyc:   XAXO190486:XAC3394-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 11143; Mature: 11011

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARITVEDCLEVVNNRFELVMMASKRARQLANGVQPLIENADASDKPTVMALREIAARRI
CCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
DNALIDEVEKAERERAEREALEWAAAEVVADEDMSKNDD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
ARITVEDCLEVVNNRFELVMMASKRARQLANGVQPLIENADASDKPTVMALREIAARRI
CCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
DNALIDEVEKAERERAEREALEWAAAEVVADEDMSKNDD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217