Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
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Accession | NC_003919 |
Length | 5,175,554 |
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The map label for this gene is pykA [H]
Identifier: 21244070
GI number: 21244070
Start: 3940985
End: 3942490
Strand: Reverse
Name: pykA [H]
Synonym: XAC3345
Alternate gene names: 21244070
Gene position: 3942490-3940985 (Counterclockwise)
Preceding gene: 21244071
Following gene: 21244069
Centisome position: 76.18
GC content: 65.34
Gene sequence:
>1506_bases GTGTGTGTTAAGTTTCGCGGCTTTTACAGGGAGGCCATCATGAAAGAACGTCAACGCCGCACCAAGATCCTCGCCACCCT CGGACCGGCAACGGATGCGCCCGGTGTGCTGGATACGCTGTTCAAGGCGGGCGTCAACGTGGTGCGCCTCAACTTCAGCC ATGGCGACCCCTCCGGCCAGGCCAAGCGTGCCGCCGAAGTGCGTGCCGCTGCGGCCCGCGTCGGTGCCGAAGTCGGCATC CTGGCCGACTTGCCGGGCCCGAAGATCCGTATCGAACGTTTTGCCGAAGGCAAGATCAAGCTGACCATGGGCGATCGCTT CGACCTGGTGGCCGATGCCAACGCGCCGGCTGGCGACCAGACACAGGTTGGCGTCAGCTATCTGGGTCTGCCGCAGGACG TGACCGCCGGCGACGTCCTGCTGCTCGACGATGGCCTGATGCAGTTGCAGGTCACCGATGTGCAGGGCGCGCGCATCGTC ACCAAGGTGTTGAACGATGGCGTGCTGTCCGACCGCAAGGGCCTCAACAAGCAGGGCGGTGGTCTGTCGCTGGGCGCGTT GACCGAACGCGACAAGGAACTGATCGGCATCGTTGCCAAGATCGGCGTGGACTTCATCGCGGTGTCGTTCTGTCGTAACG CGCAGGACATGCACGACGCACGTCAGATCGCCCAGCAGCATGGCTGCGATGCGCAACTGGTGTCCAAGATCGAGCGCACC GAGGCGATCGAAAACCTGGTCGAGATCGTCGAAGCCTCCGATGTGGTGATGGTGGCGCGTGGCGACCTGGGCGTTGAAAT CGGCGACGCCGAATTGCCGGGCCTGCAGAAGAAGATCATTCGCGAATCGCTGGCGCAGAACAAGGTGGTGATCACCGCCA CGCAGATGCTGCAGTCGATGGTCGAAAGCCCGATCCCCACCCGCGCCGAAGTGCTGGACGTGGCCAACGCGGTCATCGAC GGCACCGACGCGGTGATGCTCTCGGCCGAGACCGCCGCCGGCGCCTACCCGGTGCGTGCGGTGGAAGCGATGGCGCGCAT CTGTCTGGGGGCCGAACACCAGTTCGAGTTCGATACCGACTTCGAAGCGGCGCAACGCAATCTGCAGCGCGCCGACCAGG CGATTGCGATGGCGACCATGTTCCTGTCCGAGCACATCGGCCTGGGCGGCGTGGTGGCGTTGACCGAATCCGGCGGCACG CCGCGCTTCCTGTCGCGCTTCCGCTCCAATATGCCGATCTACGCCTTCACCCGTCACGATGGCGCACGCCGCCAGATGGC GATGATGCGTGGCGTGTTCCCGATCAGCTTCGACAGCCGCGGCCTGACCCCGCGCGAGGCCGCACGTGCGGCGATCCGCC TGCTGGTGGAGAACGAGCGCATGGGGCCTGGCGACCGCGTGGTCTTTACCAGTGGCGAGCACATGGAAACCCACGGCGCC ACCAACACGCTGCGCCTGCTGGAAGTGGGCGAAGACGGCCGCGCCACCGGTCTGGGCGAGCTGTAA
Upstream 100 bases:
>100_bases TGGCAGCGCGGGCGCAGGCGTACGTACTGTCCCGCACTGTCTGTAAGACATGCCGGAATCGGAGGAAGGCTATGCCGCAA TGCCATCCTCGGTACGTGAC
Downstream 100 bases:
>100_bases CGCCTGTCGACCGCATCCGGCGCATGACCTGAGCCGGAACAGACGCGCCACACGACGGCGGCCCCAGGGCCGCCGTCGTG CGATGTGGCGACCTGGCCGC
Product: pyruvate kinase
Products: NA
Alternate protein names: PK-2 [H]
Number of amino acids: Translated: 501; Mature: 501
Protein sequence:
>501_residues MCVKFRGFYREAIMKERQRRTKILATLGPATDAPGVLDTLFKAGVNVVRLNFSHGDPSGQAKRAAEVRAAAARVGAEVGI LADLPGPKIRIERFAEGKIKLTMGDRFDLVADANAPAGDQTQVGVSYLGLPQDVTAGDVLLLDDGLMQLQVTDVQGARIV TKVLNDGVLSDRKGLNKQGGGLSLGALTERDKELIGIVAKIGVDFIAVSFCRNAQDMHDARQIAQQHGCDAQLVSKIERT EAIENLVEIVEASDVVMVARGDLGVEIGDAELPGLQKKIIRESLAQNKVVITATQMLQSMVESPIPTRAEVLDVANAVID GTDAVMLSAETAAGAYPVRAVEAMARICLGAEHQFEFDTDFEAAQRNLQRADQAIAMATMFLSEHIGLGGVVALTESGGT PRFLSRFRSNMPIYAFTRHDGARRQMAMMRGVFPISFDSRGLTPREAARAAIRLLVENERMGPGDRVVFTSGEHMETHGA TNTLRLLEVGEDGRATGLGEL
Sequences:
>Translated_501_residues MCVKFRGFYREAIMKERQRRTKILATLGPATDAPGVLDTLFKAGVNVVRLNFSHGDPSGQAKRAAEVRAAAARVGAEVGI LADLPGPKIRIERFAEGKIKLTMGDRFDLVADANAPAGDQTQVGVSYLGLPQDVTAGDVLLLDDGLMQLQVTDVQGARIV TKVLNDGVLSDRKGLNKQGGGLSLGALTERDKELIGIVAKIGVDFIAVSFCRNAQDMHDARQIAQQHGCDAQLVSKIERT EAIENLVEIVEASDVVMVARGDLGVEIGDAELPGLQKKIIRESLAQNKVVITATQMLQSMVESPIPTRAEVLDVANAVID GTDAVMLSAETAAGAYPVRAVEAMARICLGAEHQFEFDTDFEAAQRNLQRADQAIAMATMFLSEHIGLGGVVALTESGGT PRFLSRFRSNMPIYAFTRHDGARRQMAMMRGVFPISFDSRGLTPREAARAAIRLLVENERMGPGDRVVFTSGEHMETHGA TNTLRLLEVGEDGRATGLGEL >Mature_501_residues MCVKFRGFYREAIMKERQRRTKILATLGPATDAPGVLDTLFKAGVNVVRLNFSHGDPSGQAKRAAEVRAAAARVGAEVGI LADLPGPKIRIERFAEGKIKLTMGDRFDLVADANAPAGDQTQVGVSYLGLPQDVTAGDVLLLDDGLMQLQVTDVQGARIV TKVLNDGVLSDRKGLNKQGGGLSLGALTERDKELIGIVAKIGVDFIAVSFCRNAQDMHDARQIAQQHGCDAQLVSKIERT EAIENLVEIVEASDVVMVARGDLGVEIGDAELPGLQKKIIRESLAQNKVVITATQMLQSMVESPIPTRAEVLDVANAVID GTDAVMLSAETAAGAYPVRAVEAMARICLGAEHQFEFDTDFEAAQRNLQRADQAIAMATMFLSEHIGLGGVVALTESGGT PRFLSRFRSNMPIYAFTRHDGARRQMAMMRGVFPISFDSRGLTPREAARAAIRLLVENERMGPGDRVVFTSGEHMETHGA TNTLRLLEVGEDGRATGLGEL
Specific function: Glycolysis; final step. [C]
COG id: COG0469
COG function: function code G; Pyruvate kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pyruvate kinase family [H]
Homologues:
Organism=Homo sapiens, GI33286422, Length=430, Percent_Identity=36.5116279069767, Blast_Score=248, Evalue=9e-66, Organism=Homo sapiens, GI33286420, Length=430, Percent_Identity=36.5116279069767, Blast_Score=248, Evalue=9e-66, Organism=Homo sapiens, GI33286418, Length=493, Percent_Identity=34.8884381338742, Blast_Score=246, Evalue=5e-65, Organism=Homo sapiens, GI32967597, Length=493, Percent_Identity=35.2941176470588, Blast_Score=240, Evalue=2e-63, Organism=Homo sapiens, GI10835121, Length=493, Percent_Identity=35.2941176470588, Blast_Score=240, Evalue=2e-63, Organism=Homo sapiens, GI310128732, Length=287, Percent_Identity=34.1463414634146, Blast_Score=146, Evalue=5e-35, Organism=Homo sapiens, GI310128730, Length=287, Percent_Identity=34.1463414634146, Blast_Score=146, Evalue=5e-35, Organism=Homo sapiens, GI310128736, Length=235, Percent_Identity=31.4893617021277, Blast_Score=118, Evalue=1e-26, Organism=Homo sapiens, GI310128734, Length=235, Percent_Identity=31.4893617021277, Blast_Score=118, Evalue=1e-26, Organism=Homo sapiens, GI310128738, Length=214, Percent_Identity=30.8411214953271, Blast_Score=103, Evalue=5e-22, Organism=Escherichia coli, GI1788160, Length=480, Percent_Identity=51.25, Blast_Score=461, Evalue=1e-131, Organism=Escherichia coli, GI1787965, Length=467, Percent_Identity=37.9014989293362, Blast_Score=299, Evalue=3e-82, Organism=Caenorhabditis elegans, GI17544584, Length=483, Percent_Identity=34.7826086956522, Blast_Score=267, Evalue=8e-72, Organism=Caenorhabditis elegans, GI17506831, Length=490, Percent_Identity=35.7142857142857, Blast_Score=237, Evalue=1e-62, Organism=Caenorhabditis elegans, GI71984413, Length=490, Percent_Identity=35.7142857142857, Blast_Score=236, Evalue=2e-62, Organism=Caenorhabditis elegans, GI71984406, Length=490, Percent_Identity=35.7142857142857, Blast_Score=236, Evalue=2e-62, Organism=Caenorhabditis elegans, GI17506829, Length=490, Percent_Identity=35.7142857142857, Blast_Score=236, Evalue=2e-62, Organism=Saccharomyces cerevisiae, GI6319279, Length=434, Percent_Identity=36.1751152073733, Blast_Score=258, Evalue=2e-69, Organism=Saccharomyces cerevisiae, GI6324923, Length=492, Percent_Identity=34.5528455284553, Blast_Score=242, Evalue=1e-64, Organism=Drosophila melanogaster, GI24648964, Length=488, Percent_Identity=36.0655737704918, Blast_Score=247, Evalue=1e-65, Organism=Drosophila melanogaster, GI28571814, Length=488, Percent_Identity=36.0655737704918, Blast_Score=246, Evalue=2e-65, Organism=Drosophila melanogaster, GI24648966, Length=406, Percent_Identity=35.2216748768473, Blast_Score=228, Evalue=8e-60, Organism=Drosophila melanogaster, GI24581235, Length=431, Percent_Identity=30.3944315545244, Blast_Score=194, Evalue=1e-49, Organism=Drosophila melanogaster, GI24646914, Length=283, Percent_Identity=37.1024734982332, Blast_Score=152, Evalue=4e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001697 - InterPro: IPR015813 - InterPro: IPR011037 - InterPro: IPR015794 - InterPro: IPR018209 - InterPro: IPR015793 - InterPro: IPR015795 - InterPro: IPR015806 [H]
Pfam domain/function: PF00224 PK; PF02887 PK_C [H]
EC number: =2.7.1.40 [H]
Molecular weight: Translated: 53871; Mature: 53871
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: PS00110 PYRUVATE_KINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCVKFRGFYREAIMKERQRRTKILATLGPATDAPGVLDTLFKAGVNVVRLNFSHGDPSGQ CEEEEHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCH AKRAAEVRAAAARVGAEVGILADLPGPKIRIERFAEGKIKLTMGDRFDLVADANAPAGDQ HHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCEEEEEECCCEEEEECCCCCCCCC TQVGVSYLGLPQDVTAGDVLLLDDGLMQLQVTDVQGARIVTKVLNDGVLSDRKGLNKQGG CCCCHHEECCCCCCCCCCEEEEECCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCC GLSLGALTERDKELIGIVAKIGVDFIAVSFCRNAQDMHDARQIAQQHGCDAQLVSKIERT CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHH EAIENLVEIVEASDVVMVARGDLGVEIGDAELPGLQKKIIRESLAQNKVVITATQMLQSM HHHHHHHHHHCCCCEEEEEECCCCEEECCCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHH VESPIPTRAEVLDVANAVIDGTDAVMLSAETAAGAYPVRAVEAMARICLGAEHQFEFDTD HHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC FEAAQRNLQRADQAIAMATMFLSEHIGLGGVVALTESGGTPRFLSRFRSNMPIYAFTRHD HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCEEEEECCC GARRQMAMMRGVFPISFDSRGLTPREAARAAIRLLVENERMGPGDRVVFTSGEHMETHGA CHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEECCCC TNTLRLLEVGEDGRATGLGEL CCEEEEEEECCCCCCCCCCCC >Mature Secondary Structure MCVKFRGFYREAIMKERQRRTKILATLGPATDAPGVLDTLFKAGVNVVRLNFSHGDPSGQ CEEEEHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCH AKRAAEVRAAAARVGAEVGILADLPGPKIRIERFAEGKIKLTMGDRFDLVADANAPAGDQ HHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCEEEEEECCCEEEEECCCCCCCCC TQVGVSYLGLPQDVTAGDVLLLDDGLMQLQVTDVQGARIVTKVLNDGVLSDRKGLNKQGG CCCCHHEECCCCCCCCCCEEEEECCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCC GLSLGALTERDKELIGIVAKIGVDFIAVSFCRNAQDMHDARQIAQQHGCDAQLVSKIERT CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHH EAIENLVEIVEASDVVMVARGDLGVEIGDAELPGLQKKIIRESLAQNKVVITATQMLQSM HHHHHHHHHHCCCCEEEEEECCCCEEECCCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHH VESPIPTRAEVLDVANAVIDGTDAVMLSAETAAGAYPVRAVEAMARICLGAEHQFEFDTD HHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC FEAAQRNLQRADQAIAMATMFLSEHIGLGGVVALTESGGTPRFLSRFRSNMPIYAFTRHD HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCEEEEECCC GARRQMAMMRGVFPISFDSRGLTPREAARAAIRLLVENERMGPGDRVVFTSGEHMETHGA CHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEECCCC TNTLRLLEVGEDGRATGLGEL CCEEEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503; 1732206; 1859631; 8439398 [H]