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The map label for this gene is cycL [H]

Identifier: 21242423

GI number: 21242423

Start: 1933230

End: 1933661

Strand: Reverse

Name: cycL [H]

Synonym: XAC1674

Alternate gene names: 21242423

Gene position: 1933661-1933230 (Counterclockwise)

Preceding gene: 21242424

Following gene: 21242422

Centisome position: 37.36

GC content: 65.97

Gene sequence:

>432_bases
GTGCGCCTGCTGCTGGTGTTGCTGCTTGGCGTGCTGCTGGCGCCCTCGCTGGCGGCGCAGGCCGTGGACCCGCTGCCGTT
CAAGAACCGCAGCGATGAAGCGCGCTACCAGCGCTTGACGGCGCAACTGCGTTGCCTGGTCTGCCAGAACGAAAACCTGG
CCGATTCCAACGCCAGCCTGGCGCGCGATTTGCGTCATCAGGTGTTCGCGCAACTGCAGGCCGGCAGGAGCGATGCGCAG
ATCAAGCAGTACATGGTCGATCGCTATTCGGATTTCGTGCTCTACGACCCGCCAGTCAAACGCGGCACCTGGCTGCTGTG
GTTCGGGCCGGCGCTGATGTTGCTTGCTGGTGCGGGCGTGGTCATCCACACCGTGCGCAAACGTGCGCGCGCCGGCACGC
CGGTGGCGCCGCACGCGGAGGAAGAATGGTGA

Upstream 100 bases:

>100_bases
CGGCCATCGCATCGCTTCCCAAGGCCGCGCCGTGATGGCGTCGGCGCGCTACACACGCCTGTGGCATTGGCGCTGGCAGT
GGCGCACGCAAGGCCGCCGT

Downstream 100 bases:

>100_bases
TGGCAGGTTTTTATGTCGCAAGCGCCGTGCTGGTGGCGCTGGCCTTGCTGCTGTTGCTGGCACCATTGCTGCGCCGCCCC
ACCGGCAGCGGTCATGCGCG

Product: C-type cytochrome biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MRLLLVLLLGVLLAPSLAAQAVDPLPFKNRSDEARYQRLTAQLRCLVCQNENLADSNASLARDLRHQVFAQLQAGRSDAQ
IKQYMVDRYSDFVLYDPPVKRGTWLLWFGPALMLLAGAGVVIHTVRKRARAGTPVAPHAEEEW

Sequences:

>Translated_143_residues
MRLLLVLLLGVLLAPSLAAQAVDPLPFKNRSDEARYQRLTAQLRCLVCQNENLADSNASLARDLRHQVFAQLQAGRSDAQ
IKQYMVDRYSDFVLYDPPVKRGTWLLWFGPALMLLAGAGVVIHTVRKRARAGTPVAPHAEEEW
>Mature_143_residues
MRLLLVLLLGVLLAPSLAAQAVDPLPFKNRSDEARYQRLTAQLRCLVCQNENLADSNASLARDLRHQVFAQLQAGRSDAQ
IKQYMVDRYSDFVLYDPPVKRGTWLLWFGPALMLLAGAGVVIHTVRKRARAGTPVAPHAEEEW

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=121, Percent_Identity=42.1487603305785, Blast_Score=102, Evalue=8e-24,
Organism=Escherichia coli, GI1790512, Length=85, Percent_Identity=41.1764705882353, Blast_Score=76, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 16021; Mature: 16021

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLLVLLLGVLLAPSLAAQAVDPLPFKNRSDEARYQRLTAQLRCLVCQNENLADSNASL
CHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
ARDLRHQVFAQLQAGRSDAQIKQYMVDRYSDFVLYDPPVKRGTWLLWFGPALMLLAGAGV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCCCCEEEHHHHHHHHHHCCCH
VIHTVRKRARAGTPVAPHAEEEW
HHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MRLLLVLLLGVLLAPSLAAQAVDPLPFKNRSDEARYQRLTAQLRCLVCQNENLADSNASL
CHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
ARDLRHQVFAQLQAGRSDAQIKQYMVDRYSDFVLYDPPVKRGTWLLWFGPALMLLAGAGV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCCCCEEEHHHHHHHHHHCCCH
VIHTVRKRARAGTPVAPHAEEEW
HHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]