Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
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Accession | NC_003919 |
Length | 5,175,554 |
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The map label for this gene is slyA [C]
Identifier: 21242417
GI number: 21242417
Start: 1924031
End: 1924495
Strand: Reverse
Name: slyA [C]
Synonym: XAC1668
Alternate gene names: 21242417
Gene position: 1924495-1924031 (Counterclockwise)
Preceding gene: 21242419
Following gene: 77748601
Centisome position: 37.18
GC content: 66.67
Gene sequence:
>465_bases ATGCTTGATCAGAATGAACTCATCCATCCGCAGGCTGCGGTCGCGCCAGGGTACCTGGCCAACCATGCGGCGCGGGTCTT CAACCGTCTGGTCGACGCCCAGCTGCGGCCGCACGGCGTGTCGCTGGCGCTGATCGGCCCGATCATGCTGCTGTCCTGGA AAGGCCCGATGCTGCAACGCGACCTGGTCATCGCCTCGGCCGTGAAGCAGCCGGCCATGGTGGCGCTGCTGGACAAGCTG GAGGGACTGAAGCTCATCAAGCGCACCCCGACCCCGCAGGATCGCCGCGCCGCGCTGGTGGCGCTCACCGCCCGCGGGCG CAAGATTGCCGAGCTCGGTGGGCGTGCGCTGCTGGGTATGAACGCAGTGGCGCTGGAAGGCTTTTCCACCGACGAGGTGC AGCAGACCGTCGCGTTGATGCACCGGCTGATCGCGAACATGGAGCGTCACGGGCAAGACGTGTAA
Upstream 100 bases:
>100_bases CCAGGCTTGCGCACGTTGCCACGCGGCGCCGACCGCCATGCCGCACTGCAGGAGACGTAACATTGCCCGATGGCCCCCAG GGCAACGCACGGTCGTCCAA
Downstream 100 bases:
>100_bases TATCATGCCTGATATTTCCTGCCCACGGTGACTGCAATGCCGCGTCGCATCCTCATCACCGGCGCCAGCATCGCCGGCAA CACTGCCGCCTGGACACTCG
Product: cryptic hemolysin transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator MarR Family; Transcriptional Regulator; Transcriptional Regulator MarR; MarR Family Transcriptional Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator Marr Family
Number of amino acids: Translated: 154; Mature: 154
Protein sequence:
>154_residues MLDQNELIHPQAAVAPGYLANHAARVFNRLVDAQLRPHGVSLALIGPIMLLSWKGPMLQRDLVIASAVKQPAMVALLDKL EGLKLIKRTPTPQDRRAALVALTARGRKIAELGGRALLGMNAVALEGFSTDEVQQTVALMHRLIANMERHGQDV
Sequences:
>Translated_154_residues MLDQNELIHPQAAVAPGYLANHAARVFNRLVDAQLRPHGVSLALIGPIMLLSWKGPMLQRDLVIASAVKQPAMVALLDKL EGLKLIKRTPTPQDRRAALVALTARGRKIAELGGRALLGMNAVALEGFSTDEVQQTVALMHRLIANMERHGQDV >Mature_154_residues MLDQNELIHPQAAVAPGYLANHAARVFNRLVDAQLRPHGVSLALIGPIMLLSWKGPMLQRDLVIASAVKQPAMVALLDKL EGLKLIKRTPTPQDRRAALVALTARGRKIAELGGRALLGMNAVALEGFSTDEVQQTVALMHRLIANMERHGQDV
Specific function: Transcription Factor That Activates Expression Of Genes Such As Molecular Chaperones (Grol, Gros, Dnak, Grpe, And Cbpa), Proteins Involved In Acid Resistance (Hdea, Hdeb, And Gada), The Starvation Lipoprotein Slp, Virulence Protein Hlye/Clya. Represses Ex
COG id: COG1846
COG function: function code K; Transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16733; Mature: 16733
Theoretical pI: Translated: 10.79; Mature: 10.79
Prosite motif: PS50995 HTH_MARR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDQNELIHPQAAVAPGYLANHAARVFNRLVDAQLRPHGVSLALIGPIMLLSWKGPMLQR CCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHH DLVIASAVKQPAMVALLDKLEGLKLIKRTPTPQDRRAALVALTARGRKIAELGGRALLGM HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEECCCCCHHHHHCCCCEECC NAVALEGFSTDEVQQTVALMHRLIANMERHGQDV CHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MLDQNELIHPQAAVAPGYLANHAARVFNRLVDAQLRPHGVSLALIGPIMLLSWKGPMLQR CCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHH DLVIASAVKQPAMVALLDKLEGLKLIKRTPTPQDRRAALVALTARGRKIAELGGRALLGM HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEECCCCCHHHHHCCCCEECC NAVALEGFSTDEVQQTVALMHRLIANMERHGQDV CHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA