Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
---|---|
Accession | NC_003919 |
Length | 5,175,554 |
Click here to switch to the map view.
The map label for this gene is 21242297
Identifier: 21242297
GI number: 21242297
Start: 1787570
End: 1788556
Strand: Reverse
Name: 21242297
Synonym: XAC1546
Alternate gene names: NA
Gene position: 1788556-1787570 (Counterclockwise)
Preceding gene: 21242298
Following gene: 21242296
Centisome position: 34.56
GC content: 64.54
Gene sequence:
>987_bases ATGAATGCAGTGACCAACAAAGCATCACCCGCACGCACCTTCGCCTGGCTGCTCAAACGCGAATATTGGGAGCACCGTGG CGGCTTCGTGTGGGCGCAGTTCATCACCGGTGGCATTGCGGTGTTCTTCGCGCTGCTGGGCGCGGTGATCGGTGCGATCA GTGCGCGCCGCAACATGGTCGGCGACAGCATCGCCATGGACGACCTGGCCGAATACACCCGCACGCTGGGCCAGGTCGGC GACGGCCTGCTGCTGGGCGGCATCGGCATCGCGTCGGTAGTCCTGGCGTTCGTGGTGTTTTTCTATGCGCTCGGCAGCCT GTACGACGACCGCCGCGACCGCAGCGTGCTGTTCTGGAAATCGTTGCCGGTGTCGGACGTGCAGACGGTGTTGTCCAAGG CCGCCTGGGCGTTGCTGCTGGCGCCGCTGATTTCCATCGCGATCGGTGCGGCGGTCGGCATGGCGCTGTGGTTGATCGCC ATCGTTGGCGCCTTGATTGCAGGTGTGCCCAGCCCATGGGCGCTGGCGACCCATTCGCACCCGTTTTCGCTGCTATGGCT GTTGCTGAAGACCGTTCCGATGAGCCTGTTGTGGGCGCTGCCGACCGTGGGCTGGCTGATGTTCTGCTCGGCCTGGGCCA ACAGCAAGCCGTTCCTGTGGGCGGTGCTGTTTCCGCTGCTGGCCTGCGTGATGCTGAGCATTCTCTCGGCGATGCCGGGC GTGTCGCTGCCGATCGGCTGGATCTGGTACATCGTCGGCTATCGCGGCCTGCTCAGCGCCCTGCCCGGCACTTGGTCGCC GCTTGCCGTCAGCGGCAATCTGGACAGCAGCATGATCCAGAACCCCAGCGATCTGGTGCAGTGGGCATTGCAGCACACCG ATAGCACACGTGTGTATGGCAGCCCTGACATCTGGATCGGCGCAGCCATCGGCGTTGCGTTGATCGCCGCCTCCATCTAT CTGCGCCGTCGGCGCTCCGAAGCCTGA
Upstream 100 bases:
>100_bases TGTTCGATGGCGCGCCGAAAGAGCAGCTCGCCCGTTTTGGCGAAACCCGCAATCCCGGCCTAGCCGACCTGTTCGTTGCG GTCATGAAGGGGACCTACGC
Downstream 100 bases:
>100_bases GGGACGTCCCATGCGCCTGACCCTGAGCCTGGCCATCCTGCTCGCATTGCCCGGTGTCGCAGCGGCAGAGGAGCAGTGCA AATTCTCCGAACCACGCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: ABC-2 Type Transport System Permease; Transmembrane Protein; ABC Transporter Inner Membrane Subunit; ABC Transporter Permease
Number of amino acids: Translated: 328; Mature: 328
Protein sequence:
>328_residues MNAVTNKASPARTFAWLLKREYWEHRGGFVWAQFITGGIAVFFALLGAVIGAISARRNMVGDSIAMDDLAEYTRTLGQVG DGLLLGGIGIASVVLAFVVFFYALGSLYDDRRDRSVLFWKSLPVSDVQTVLSKAAWALLLAPLISIAIGAAVGMALWLIA IVGALIAGVPSPWALATHSHPFSLLWLLLKTVPMSLLWALPTVGWLMFCSAWANSKPFLWAVLFPLLACVMLSILSAMPG VSLPIGWIWYIVGYRGLLSALPGTWSPLAVSGNLDSSMIQNPSDLVQWALQHTDSTRVYGSPDIWIGAAIGVALIAASIY LRRRRSEA
Sequences:
>Translated_328_residues MNAVTNKASPARTFAWLLKREYWEHRGGFVWAQFITGGIAVFFALLGAVIGAISARRNMVGDSIAMDDLAEYTRTLGQVG DGLLLGGIGIASVVLAFVVFFYALGSLYDDRRDRSVLFWKSLPVSDVQTVLSKAAWALLLAPLISIAIGAAVGMALWLIA IVGALIAGVPSPWALATHSHPFSLLWLLLKTVPMSLLWALPTVGWLMFCSAWANSKPFLWAVLFPLLACVMLSILSAMPG VSLPIGWIWYIVGYRGLLSALPGTWSPLAVSGNLDSSMIQNPSDLVQWALQHTDSTRVYGSPDIWIGAAIGVALIAASIY LRRRRSEA >Mature_328_residues MNAVTNKASPARTFAWLLKREYWEHRGGFVWAQFITGGIAVFFALLGAVIGAISARRNMVGDSIAMDDLAEYTRTLGQVG DGLLLGGIGIASVVLAFVVFFYALGSLYDDRRDRSVLFWKSLPVSDVQTVLSKAAWALLLAPLISIAIGAAVGMALWLIA IVGALIAGVPSPWALATHSHPFSLLWLLLKTVPMSLLWALPTVGWLMFCSAWANSKPFLWAVLFPLLACVMLSILSAMPG VSLPIGWIWYIVGYRGLLSALPGTWSPLAVSGNLDSSMIQNPSDLVQWALQHTDSTRVYGSPDIWIGAAIGVALIAASIY LRRRRSEA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35458; Mature: 35458
Theoretical pI: Translated: 9.59; Mature: 9.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAVTNKASPARTFAWLLKREYWEHRGGFVWAQFITGGIAVFFALLGAVIGAISARRNMV CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GDSIAMDDLAEYTRTLGQVGDGLLLGGIGIASVVLAFVVFFYALGSLYDDRRDRSVLFWK CCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC SLPVSDVQTVLSKAAWALLLAPLISIAIGAAVGMALWLIAIVGALIAGVPSPWALATHSH CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCC PFSLLWLLLKTVPMSLLWALPTVGWLMFCSAWANSKPFLWAVLFPLLACVMLSILSAMPG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC VSLPIGWIWYIVGYRGLLSALPGTWSPLAVSGNLDSSMIQNPSDLVQWALQHTDSTRVYG CCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHCCHHHHHHHHHHHCCCCEECC SPDIWIGAAIGVALIAASIYLRRRRSEA CCCHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNAVTNKASPARTFAWLLKREYWEHRGGFVWAQFITGGIAVFFALLGAVIGAISARRNMV CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GDSIAMDDLAEYTRTLGQVGDGLLLGGIGIASVVLAFVVFFYALGSLYDDRRDRSVLFWK CCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC SLPVSDVQTVLSKAAWALLLAPLISIAIGAAVGMALWLIAIVGALIAGVPSPWALATHSH CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCC PFSLLWLLLKTVPMSLLWALPTVGWLMFCSAWANSKPFLWAVLFPLLACVMLSILSAMPG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC VSLPIGWIWYIVGYRGLLSALPGTWSPLAVSGNLDSSMIQNPSDLVQWALQHTDSTRVYG CCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHCCHHHHHHHHHHHCCCCEECC SPDIWIGAAIGVALIAASIYLRRRRSEA CCCHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA