Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
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Accession | NC_003919 |
Length | 5,175,554 |
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The map label for this gene is dcp [H]
Identifier: 21242208
GI number: 21242208
Start: 1680515
End: 1682713
Strand: Reverse
Name: dcp [H]
Synonym: XAC1456
Alternate gene names: 21242208
Gene position: 1682713-1680515 (Counterclockwise)
Preceding gene: 21242210
Following gene: 21242204
Centisome position: 32.51
GC content: 62.03
Gene sequence:
>2199_bases TTGACCACCCGTCTCGCTTTTGCCCTGGCCGCCTCCCTGGGACTTGCCATGCCGTCCTACAGCATCGCCGCCCCCGCTGC CACGCAGGCCGCCACCCAAGCCAACCCCTTCTTCGCCGACAGCACGCTGCCGCTGCATTACCCGCAGTTCGACAAAATTA AGGACAGCGATTTCGCACCTGCCTTCGATGCGGGCATGGCCGAGCAGTTGAAGGAAGTGGAAAAAATCGCCAGCCAGAAG GCCAAGCCCAGTTTCGACAACACCATCATCGCGCTGGAAAAGAGCGGTGCCACGCTCGACCGCGCCACCACGGTGTTCTT CAACCTGGTCGGCGCAGACACCAACGACGCACGCAAGAAATTGCAAGCCGACTATTCGGCGAAGTTCGCAGCGCACCGCG ATGCGATTTCGCTCAACGGCAAGCTGTTCGCACGCATCCAGACCTTGTACGACCAACGCGCCAAGCTGGGGCTGGATGCG CAGGGCGTGCGCCTGGTCGAGAAGTACTACAGCGACTTCGTGCGCGACGGCGCCAAGCTCTCCGACGCCGACAAGACCAC GCTCAAGGCTATGAATGCCGAGCTGGCCAACCTGGGCACCACTTTCAGCCAGAACGTGCTGGCCGAAGTGAATGCTGCCG CTGTGGTCGTGGACGACGTCAAGCAACTGGATGGTTTGTCGCAGGAGCAGATTGCCGCTGCCGCCGAAGCCGCCAAGGCA CGCAAGCTCGACGGCAAGTACGTCATCGCGCTGCTCAATACCACCGGCCAACCGCCGCTGACCCAGCTGAAGAATCGCGA GCTGCGCAAGAAGATCTACGACGCCTCGGTGTCGCGCGGCAGCCACGGCGGCCAGTACGACAACACCGCGCTGGTGGCGC GCATCATGAAGCTGCGTGCCGACAAGGCCAAGTTGCTGGGCTTCCCAACCTATGCCGCCTACTCGCTGGAAAACCAGACC GCCAAGACCCCCGAAGCGGTCAACGCGATGCTGGGCAAACTGGCACCGGCCGCGGTGGCCAATGCCAAGCGCGAAGCCGC CGATCTGCAGGCGATGATCGACAAGGAACAAAAGGCCGCGCGCAAGCCGACCTTCAAGCTCGAAGCCTGGGATTGGGCCT ACTACAGCGAGAAGGTGCGCCAGGCCAAGTACAACTTCGACGAATCGCAGCTCAAGCCGTACTTCGAGTTGAAGAACGTG CTGGAAAACGGCGTGTTCTATGCGGCCAATCAGGAATACGGCCTGACCTTCAAGCAGCGCACCGACCTGCCGACCTACCG CGACGACATCACCGTCTACGACGTGTTCGACGCGGACGGCAAGCAGTTGGCGATCTTCATTGCCGACATGTATGCGCGCG AATCCAAGCGCGGTGGCGCATGGATGAACTCCTATGTGTCGCAGTCGGACCTGACCGGCTTCAAGCCGGTGGTGGCCAAC CACCTCAACATTCCCAAGCCGCCGGCCGGCCAGCCGACGCTGCTGACCTGGGATGAGGTGACCACCATGTTCCATGAGTT CGGGCATGCGCTGCACGGCATGTTTTCCGACGTCAAATACCCGTATTTCTCCGGTACCAGCGTGCCGCGCGACTTCGTCG AGTTCCCCTCGCAGGTCAACGAGATGTGGGCCGACGAGCCGTCCATCCTGAAGAACTACGCCAAGCATTATCAGAACGGC ACGCCGATGCCACAGGCATTGCTGGACAAGGTGATTGCCGCATCCAAGTTCAACCAGGGCTTTGCCACCACCGAGTACCT GGGTGCGGCAATGCTGGATCAGAACTGGCACCAGGTCAGCGCCAACCAGGTGCCAGACGCCGCTGGCGTGATGGCATTCG AAGCCAAGGCGCTGCAGCAGGACGGCATTGCTTATGCACCGGTGCCGCCGCGCTACAAGACCCCGTATTTCAGCCACATC ATGGGCGGTTACGCGGCAGGCTACTACGCCTACATCTGGTCGGAAGTGCTGGACGCCAACACCCAGCAGTGGTTCAAGCA GCACGGTGGCCTGAGCCGCGCCAATGGCGATCGTTTCCGCAAAACCCTGCTTTCGCGCGGCGGTAGCGTGGATGCGATGG AGCTGTTCCAGAACTTCGCCGGGCATGCCCCGCAGATCGAGCCGCTGCTCGAAAAGCGCGGTCTCAGCGCGCAAGGCGGC GATGGTGCGACACCGGAAGCGCCGCAGTCCAGGCCGTAA
Upstream 100 bases:
>100_bases CCTGATGGCGTTGCATTGGCTTGGCAGCCATGCCTTTTGTCACACGCCTGTCCCGACTGGCTGGGTTAGCCTCGGCGGTT CGCACTTTGGAGCAACTCTC
Downstream 100 bases:
>100_bases ATCGGCTGCACGATCCGCGCGCGGTGGTGAGGCCGCGCGTGTGGCGGCAGGATCGGCATATCCCCTTCGGGCATGCCGAT CTTGGACATCAGACGAGACA
Product: peptidyl-dipeptidase
Products: NA
Alternate protein names: Dipeptidyl carboxypeptidase [H]
Number of amino acids: Translated: 732; Mature: 731
Protein sequence:
>732_residues MTTRLAFALAASLGLAMPSYSIAAPAATQAATQANPFFADSTLPLHYPQFDKIKDSDFAPAFDAGMAEQLKEVEKIASQK AKPSFDNTIIALEKSGATLDRATTVFFNLVGADTNDARKKLQADYSAKFAAHRDAISLNGKLFARIQTLYDQRAKLGLDA QGVRLVEKYYSDFVRDGAKLSDADKTTLKAMNAELANLGTTFSQNVLAEVNAAAVVVDDVKQLDGLSQEQIAAAAEAAKA RKLDGKYVIALLNTTGQPPLTQLKNRELRKKIYDASVSRGSHGGQYDNTALVARIMKLRADKAKLLGFPTYAAYSLENQT AKTPEAVNAMLGKLAPAAVANAKREAADLQAMIDKEQKAARKPTFKLEAWDWAYYSEKVRQAKYNFDESQLKPYFELKNV LENGVFYAANQEYGLTFKQRTDLPTYRDDITVYDVFDADGKQLAIFIADMYARESKRGGAWMNSYVSQSDLTGFKPVVAN HLNIPKPPAGQPTLLTWDEVTTMFHEFGHALHGMFSDVKYPYFSGTSVPRDFVEFPSQVNEMWADEPSILKNYAKHYQNG TPMPQALLDKVIAASKFNQGFATTEYLGAAMLDQNWHQVSANQVPDAAGVMAFEAKALQQDGIAYAPVPPRYKTPYFSHI MGGYAAGYYAYIWSEVLDANTQQWFKQHGGLSRANGDRFRKTLLSRGGSVDAMELFQNFAGHAPQIEPLLEKRGLSAQGG DGATPEAPQSRP
Sequences:
>Translated_732_residues MTTRLAFALAASLGLAMPSYSIAAPAATQAATQANPFFADSTLPLHYPQFDKIKDSDFAPAFDAGMAEQLKEVEKIASQK AKPSFDNTIIALEKSGATLDRATTVFFNLVGADTNDARKKLQADYSAKFAAHRDAISLNGKLFARIQTLYDQRAKLGLDA QGVRLVEKYYSDFVRDGAKLSDADKTTLKAMNAELANLGTTFSQNVLAEVNAAAVVVDDVKQLDGLSQEQIAAAAEAAKA RKLDGKYVIALLNTTGQPPLTQLKNRELRKKIYDASVSRGSHGGQYDNTALVARIMKLRADKAKLLGFPTYAAYSLENQT AKTPEAVNAMLGKLAPAAVANAKREAADLQAMIDKEQKAARKPTFKLEAWDWAYYSEKVRQAKYNFDESQLKPYFELKNV LENGVFYAANQEYGLTFKQRTDLPTYRDDITVYDVFDADGKQLAIFIADMYARESKRGGAWMNSYVSQSDLTGFKPVVAN HLNIPKPPAGQPTLLTWDEVTTMFHEFGHALHGMFSDVKYPYFSGTSVPRDFVEFPSQVNEMWADEPSILKNYAKHYQNG TPMPQALLDKVIAASKFNQGFATTEYLGAAMLDQNWHQVSANQVPDAAGVMAFEAKALQQDGIAYAPVPPRYKTPYFSHI MGGYAAGYYAYIWSEVLDANTQQWFKQHGGLSRANGDRFRKTLLSRGGSVDAMELFQNFAGHAPQIEPLLEKRGLSAQGG DGATPEAPQSRP >Mature_731_residues TTRLAFALAASLGLAMPSYSIAAPAATQAATQANPFFADSTLPLHYPQFDKIKDSDFAPAFDAGMAEQLKEVEKIASQKA KPSFDNTIIALEKSGATLDRATTVFFNLVGADTNDARKKLQADYSAKFAAHRDAISLNGKLFARIQTLYDQRAKLGLDAQ GVRLVEKYYSDFVRDGAKLSDADKTTLKAMNAELANLGTTFSQNVLAEVNAAAVVVDDVKQLDGLSQEQIAAAAEAAKAR KLDGKYVIALLNTTGQPPLTQLKNRELRKKIYDASVSRGSHGGQYDNTALVARIMKLRADKAKLLGFPTYAAYSLENQTA KTPEAVNAMLGKLAPAAVANAKREAADLQAMIDKEQKAARKPTFKLEAWDWAYYSEKVRQAKYNFDESQLKPYFELKNVL ENGVFYAANQEYGLTFKQRTDLPTYRDDITVYDVFDADGKQLAIFIADMYARESKRGGAWMNSYVSQSDLTGFKPVVANH LNIPKPPAGQPTLLTWDEVTTMFHEFGHALHGMFSDVKYPYFSGTSVPRDFVEFPSQVNEMWADEPSILKNYAKHYQNGT PMPQALLDKVIAASKFNQGFATTEYLGAAMLDQNWHQVSANQVPDAAGVMAFEAKALQQDGIAYAPVPPRYKTPYFSHIM GGYAAGYYAYIWSEVLDANTQQWFKQHGGLSRANGDRFRKTLLSRGGSVDAMELFQNFAGHAPQIEPLLEKRGLSAQGGD GATPEAPQSRP
Specific function: Removes dipeptides from the C-termini of N-blocked tripeptides, tetrapeptides and larger peptides [H]
COG id: COG0339
COG function: function code E; Zn-dependent oligopeptidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M3 family [H]
Homologues:
Organism=Homo sapiens, GI4507491, Length=667, Percent_Identity=29.0854572713643, Blast_Score=247, Evalue=3e-65, Organism=Homo sapiens, GI14149738, Length=594, Percent_Identity=30.8080808080808, Blast_Score=234, Evalue=2e-61, Organism=Homo sapiens, GI156105687, Length=599, Percent_Identity=24.7078464106845, Blast_Score=160, Evalue=5e-39, Organism=Escherichia coli, GI1787819, Length=686, Percent_Identity=46.9387755102041, Blast_Score=647, Evalue=0.0, Organism=Escherichia coli, GI1789913, Length=682, Percent_Identity=32.9912023460411, Blast_Score=338, Evalue=8e-94, Organism=Saccharomyces cerevisiae, GI6319793, Length=593, Percent_Identity=26.3069139966273, Blast_Score=178, Evalue=3e-45, Organism=Saccharomyces cerevisiae, GI6322715, Length=503, Percent_Identity=25.4473161033797, Blast_Score=110, Evalue=6e-25, Organism=Drosophila melanogaster, GI20129717, Length=412, Percent_Identity=27.4271844660194, Blast_Score=152, Evalue=6e-37, Organism=Drosophila melanogaster, GI21356111, Length=588, Percent_Identity=23.8095238095238, Blast_Score=152, Evalue=7e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001567 [H]
Pfam domain/function: PF01432 Peptidase_M3 [H]
EC number: =3.4.15.5 [H]
Molecular weight: Translated: 80530; Mature: 80398
Theoretical pI: Translated: 7.91; Mature: 7.91
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTRLAFALAASLGLAMPSYSIAAPAATQAATQANPFFADSTLPLHYPQFDKIKDSDFAP CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC AFDAGMAEQLKEVEKIASQKAKPSFDNTIIALEKSGATLDRATTVFFNLVGADTNDARKK HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHEECCCCHHHHHH LQADYSAKFAAHRDAISLNGKLFARIQTLYDQRAKLGLDAQGVRLVEKYYSDFVRDGAKL HHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC SDADKTTLKAMNAELANLGTTFSQNVLAEVNAAAVVVDDVKQLDGLSQEQIAAAAEAAKA CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHEEHHHHHHHCCCCHHHHHHHHHHHHH RKLDGKYVIALLNTTGQPPLTQLKNRELRKKIYDASVSRGSHGGQYDNTALVARIMKLRA HCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC DKAKLLGFPTYAAYSLENQTAKTPEAVNAMLGKLAPAAVANAKREAADLQAMIDKEQKAA CHHHHCCCCCHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RKPTFKLEAWDWAYYSEKVRQAKYNFDESQLKPYFELKNVLENGVFYAANQEYGLTFKQR CCCCEEEECCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCEEEEECCCCCCEECCC TDLPTYRDDITVYDVFDADGKQLAIFIADMYARESKRGGAWMNSYVSQSDLTGFKPVVAN CCCCCCCCCEEEEEEECCCCCEEEEEHHHHHHHHCCCCCHHHHHHHCHHCCCCCCHHHHC HLNIPKPPAGQPTLLTWDEVTTMFHEFGHALHGMFSDVKYPYFSGTSVPRDFVEFPSQVN CCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH EMWADEPSILKNYAKHYQNGTPMPQALLDKVIAASKFNQGFATTEYLGAAMLDQNWHQVS HHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHCC ANQVPDAAGVMAFEAKALQQDGIAYAPVPPRYKTPYFSHIMGGYAAGYYAYIWSEVLDAN CCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC TQQWFKQHGGLSRANGDRFRKTLLSRGGSVDAMELFQNFAGHAPQIEPLLEKRGLSAQGG HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCC DGATPEAPQSRP CCCCCCCCCCCC >Mature Secondary Structure TTRLAFALAASLGLAMPSYSIAAPAATQAATQANPFFADSTLPLHYPQFDKIKDSDFAP CHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC AFDAGMAEQLKEVEKIASQKAKPSFDNTIIALEKSGATLDRATTVFFNLVGADTNDARKK HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHEECCCCHHHHHH LQADYSAKFAAHRDAISLNGKLFARIQTLYDQRAKLGLDAQGVRLVEKYYSDFVRDGAKL HHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC SDADKTTLKAMNAELANLGTTFSQNVLAEVNAAAVVVDDVKQLDGLSQEQIAAAAEAAKA CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHEEHHHHHHHCCCCHHHHHHHHHHHHH RKLDGKYVIALLNTTGQPPLTQLKNRELRKKIYDASVSRGSHGGQYDNTALVARIMKLRA HCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC DKAKLLGFPTYAAYSLENQTAKTPEAVNAMLGKLAPAAVANAKREAADLQAMIDKEQKAA CHHHHCCCCCHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RKPTFKLEAWDWAYYSEKVRQAKYNFDESQLKPYFELKNVLENGVFYAANQEYGLTFKQR CCCCEEEECCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCEEEEECCCCCCEECCC TDLPTYRDDITVYDVFDADGKQLAIFIADMYARESKRGGAWMNSYVSQSDLTGFKPVVAN CCCCCCCCCEEEEEEECCCCCEEEEEHHHHHHHHCCCCCHHHHHHHCHHCCCCCCHHHHC HLNIPKPPAGQPTLLTWDEVTTMFHEFGHALHGMFSDVKYPYFSGTSVPRDFVEFPSQVN CCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH EMWADEPSILKNYAKHYQNGTPMPQALLDKVIAASKFNQGFATTEYLGAAMLDQNWHQVS HHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHCC ANQVPDAAGVMAFEAKALQQDGIAYAPVPPRYKTPYFSHIMGGYAAGYYAYIWSEVLDAN CCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC TQQWFKQHGGLSRANGDRFRKTLLSRGGSVDAMELFQNFAGHAPQIEPLLEKRGLSAQGG HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCC DGATPEAPQSRP CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226676; 9097039; 9278503 [H]