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The map label for this gene is yeaM [H]

Identifier: 21242195

GI number: 21242195

Start: 1664995

End: 1665810

Strand: Reverse

Name: yeaM [H]

Synonym: XAC1442

Alternate gene names: 21242195

Gene position: 1665810-1664995 (Counterclockwise)

Preceding gene: 21242200

Following gene: 21242194

Centisome position: 32.19

GC content: 71.57

Gene sequence:

>816_bases
TTGCCGCCAGGCGTACGCGCCAGCTTCGAAAAGACCGATGGGCCGGTGCTGATCGCCTTCCTGGCAGAGCTGCGCGAGGT
ATGGGCGCCGGAAACTGCCTGGCACGCGCATGTCCGCGGTCAGCTGATGTACGTGGAGCACGGCGTGCTCACCGTGCACA
CCGAACAAGGCGCCTTGTCGCTGCCGCCGGGCTGCGCAGGCTGGATGCCGCCCGGGCAGCAGCACACCGTGGAACTGGCC
GGGCCGATGCGCGGCTGGGGCGTGGTTGTGCGGCCGGATGCCTGCGCCGCCCTGCCTGCGCAGGGCGGCGTGATCCGCCT
GACCGGGCTGGCCCGCGAGGCCATCATGCGGGCCGCCAGCTGGCCGCTGGATCAGCCGCTGGATGCCACCCAGCAACGCC
TGGCTGCGGTACTGCTGGACGAGCTATGCCAGGTGCAGATCGACCACCTGCACCTGCCGATGCCCGCCGACCGCCGGCTG
CTGCGGATCGCCCGCCAGTTGCTCGACACGCCCGCCGACCCACGCCCGCTCGACGCCTGGGCCGACTGGGGCGGCTTGTC
GCCGCGCAGCCTGAGCCGGCATTTCCGCGACGAGACCGGCCTGAGTTTTGCGCAGTGGCGGCAGCAGGCCCGGCTGACCG
AAGGCCTGCGGCGGCTGAGCCAGGGCCATGCGGTGGCGCAGGTGGCCGACCAGCTTGGCTACAGCAGCCCCAGCGCCTTC
GTCAGCGTGTTCCATCGCCATTTCGGCGCCCCGCCAACCCGTTATCTGGCCGGCTCCCATGCACGCGGCTTGGCATCCCC
CGCCGCATCCGGATAA

Upstream 100 bases:

>100_bases
AACCGCCCGCAAGGATCGCCACCTTACGCGGCGCGTGCGCTGGCTCGGTAATACAATTGGGCCAATGAGTATCGAAAACC
CGCCAACCCAGATCGACGCC

Downstream 100 bases:

>100_bases
TCGGCGCTCTTCGAGCCCGTACCCCGGTGCGGGTTCCTCTTCACGCAGGACCTGGCTTTACATGACCGATCTGACCCGCC
CCACCTTCCACGGCTTCGAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MPPGVRASFEKTDGPVLIAFLAELREVWAPETAWHAHVRGQLMYVEHGVLTVHTEQGALSLPPGCAGWMPPGQQHTVELA
GPMRGWGVVVRPDACAALPAQGGVIRLTGLAREAIMRAASWPLDQPLDATQQRLAAVLLDELCQVQIDHLHLPMPADRRL
LRIARQLLDTPADPRPLDAWADWGGLSPRSLSRHFRDETGLSFAQWRQQARLTEGLRRLSQGHAVAQVADQLGYSSPSAF
VSVFHRHFGAPPTRYLAGSHARGLASPAASG

Sequences:

>Translated_271_residues
MPPGVRASFEKTDGPVLIAFLAELREVWAPETAWHAHVRGQLMYVEHGVLTVHTEQGALSLPPGCAGWMPPGQQHTVELA
GPMRGWGVVVRPDACAALPAQGGVIRLTGLAREAIMRAASWPLDQPLDATQQRLAAVLLDELCQVQIDHLHLPMPADRRL
LRIARQLLDTPADPRPLDAWADWGGLSPRSLSRHFRDETGLSFAQWRQQARLTEGLRRLSQGHAVAQVADQLGYSSPSAF
VSVFHRHFGAPPTRYLAGSHARGLASPAASG
>Mature_270_residues
PPGVRASFEKTDGPVLIAFLAELREVWAPETAWHAHVRGQLMYVEHGVLTVHTEQGALSLPPGCAGWMPPGQQHTVELAG
PMRGWGVVVRPDACAALPAQGGVIRLTGLAREAIMRAASWPLDQPLDATQQRLAAVLLDELCQVQIDHLHLPMPADRRLL
RIARQLLDTPADPRPLDAWADWGGLSPRSLSRHFRDETGLSFAQWRQQARLTEGLRRLSQGHAVAQVADQLGYSSPSAFV
SVFHRHFGAPPTRYLAGSHARGLASPAASG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=223, Percent_Identity=33.6322869955157, Blast_Score=121, Evalue=6e-29,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29477; Mature: 29346

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPGVRASFEKTDGPVLIAFLAELREVWAPETAWHAHVRGQLMYVEHGVLTVHTEQGALS
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCEEEEEECCEEEEEECCCCCC
LPPGCAGWMPPGQQHTVELAGPMRGWGVVVRPDACAALPAQGGVIRLTGLAREAIMRAAS
CCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHC
WPLDQPLDATQQRLAAVLLDELCQVQIDHLHLPMPADRRLLRIARQLLDTPADPRPLDAW
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHCCCCCCCCCCHH
ADWGGLSPRSLSRHFRDETGLSFAQWRQQARLTEGLRRLSQGHAVAQVADQLGYSSPSAF
HCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHH
VSVFHRHFGAPPTRYLAGSHARGLASPAASG
HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PPGVRASFEKTDGPVLIAFLAELREVWAPETAWHAHVRGQLMYVEHGVLTVHTEQGALS
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCEEEEEECCEEEEEECCCCCC
LPPGCAGWMPPGQQHTVELAGPMRGWGVVVRPDACAALPAQGGVIRLTGLAREAIMRAAS
CCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHC
WPLDQPLDATQQRLAAVLLDELCQVQIDHLHLPMPADRRLLRIARQLLDTPADPRPLDAW
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHCCCCCCCCCCHH
ADWGGLSPRSLSRHFRDETGLSFAQWRQQARLTEGLRRLSQGHAVAQVADQLGYSSPSAF
HCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHH
VSVFHRHFGAPPTRYLAGSHARGLASPAASG
HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]