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The map label for this gene is rpoE [H]

Identifier: 21242133

GI number: 21242133

Start: 1588461

End: 1589024

Strand: Reverse

Name: rpoE [H]

Synonym: XAC1380

Alternate gene names: 21242133

Gene position: 1589024-1588461 (Counterclockwise)

Preceding gene: 21242134

Following gene: 21242132

Centisome position: 30.7

GC content: 65.96

Gene sequence:

>564_bases
ATGAGTGCCATTCCTGGCCACGACGACGATGAGACCGGACGCCTGCTGACCGCAACCGCGGGCGGCGACCGGCATGCTTT
CGAAGCGCTGTATCGGCAGACCTCCGCCAAGCTGTTCGGCGTGTGCCTGCGGATGATCCCGCAACGTGCCGAAGCCGAAG
AGGTGCTGCAGGACGTGTTCACGCTGATCTGGCACAAGGCCGGGCAGTTCGACCCGAGCCGCGCACGCGGGCTCACCTGG
CTGGCGATGATCGCGCGCAACAAGGCGATCGATCACCTGCGCGCCAACGCACCGCAGCGCCGCAATGTGGCGCTGGACGA
TGCCGGCGAACTACGTGCCAGCGATGCCTCGCCGCTGGATCGCACCGAGCGCGCGAGCACGCGCCGACGCATCGATCACT
GCCTGGCCGAACTGGAACCGCCACGCAGCGAGTTGATTCGCACGGCGTTCTTCGAAGGCATCACCTACGAGGAACTCGCC
GCGCGCACCGATACGCCGATCGGCACGGTCAAGAGCTGGATCCGTCGGGGTCTGGCCAAACTCAAGGCATGTCTGGAACG
ATGA

Upstream 100 bases:

>100_bases
TTGTTGCTTGCCGCGGTGCTGCTGTGGTTCCAGCGTAAGTGAAAGACACGCTCGGCCCAGTCCGGTAGCATCGCCCCCAC
CTCACCCAACGCCCGACCGC

Downstream 100 bases:

>100_bases
GTACGCCCTTTCCCATCGACCAGGAACCGCCGCGCGACGTGCTTGCCGGCGAATACGTGCTTGGCCTGCTGAGCGCAGAA
GAACGCCTGGCGGCCGAACA

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSAIPGHDDDETGRLLTATAGGDRHAFEALYRQTSAKLFGVCLRMIPQRAEAEEVLQDVFTLIWHKAGQFDPSRARGLTW
LAMIARNKAIDHLRANAPQRRNVALDDAGELRASDASPLDRTERASTRRRIDHCLAELEPPRSELIRTAFFEGITYEELA
ARTDTPIGTVKSWIRRGLAKLKACLER

Sequences:

>Translated_187_residues
MSAIPGHDDDETGRLLTATAGGDRHAFEALYRQTSAKLFGVCLRMIPQRAEAEEVLQDVFTLIWHKAGQFDPSRARGLTW
LAMIARNKAIDHLRANAPQRRNVALDDAGELRASDASPLDRTERASTRRRIDHCLAELEPPRSELIRTAFFEGITYEELA
ARTDTPIGTVKSWIRRGLAKLKACLER
>Mature_186_residues
SAIPGHDDDETGRLLTATAGGDRHAFEALYRQTSAKLFGVCLRMIPQRAEAEEVLQDVFTLIWHKAGQFDPSRARGLTWL
AMIARNKAIDHLRANAPQRRNVALDDAGELRASDASPLDRTERASTRRRIDHCLAELEPPRSELIRTAFFEGITYEELAA
RTDTPIGTVKSWIRRGLAKLKACLER

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 20977; Mature: 20846

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAIPGHDDDETGRLLTATAGGDRHAFEALYRQTSAKLFGVCLRMIPQRAEAEEVLQDVF
CCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
TLIWHKAGQFDPSRARGLTWLAMIARNKAIDHLRANAPQRRNVALDDAGELRASDASPLD
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCH
RTERASTRRRIDHCLAELEPPRSELIRTAFFEGITYEELAARTDTPIGTVKSWIRRGLAK
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHH
LKACLER
HHHHHCC
>Mature Secondary Structure 
SAIPGHDDDETGRLLTATAGGDRHAFEALYRQTSAKLFGVCLRMIPQRAEAEEVLQDVF
CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
TLIWHKAGQFDPSRARGLTWLAMIARNKAIDHLRANAPQRRNVALDDAGELRASDASPLD
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCH
RTERASTRRRIDHCLAELEPPRSELIRTAFFEGITYEELAARTDTPIGTVKSWIRRGLAK
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHH
LKACLER
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA