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The map label for this gene is desC

Identifier: 21242131

GI number: 21242131

Start: 1586408

End: 1587304

Strand: Reverse

Name: desC

Synonym: XAC1378

Alternate gene names: NA

Gene position: 1587304-1586408 (Counterclockwise)

Preceding gene: 21242132

Following gene: 21242130

Centisome position: 30.67

GC content: 64.77

Gene sequence:

>897_bases
GTGGATTCGCAAACCGACGAGCCCCTGGACGAAGCGCGTGCCGATCGCATCGACTGGCTACGTGCGGTGCCTTTCATCGC
CTTGCACCTGGCCTGCCTGGCGGTGTTCTGGGTCGGTGCGTCCTGGTTTGCGGTGGGCATGGCGGTGGCGTTGTACGCGC
TGCGCATGTTCGCGCTCACCGGTTTTTACCACCGCTACTTCTCGCACCGCGCGTTCAAGACGTCGCGGGTGCTGCAATTC
GTGTTCGCCGCCATCGGGGCCACCTGCGTGCAGCGCGGGCCGTTGTGGTGGGCGGCGCATCATCGCAACCACCATCGACA
TACCGACACCGGCCGCGATCCGCATTCGCCGGCGCAGCACGGCTTCTGGTGGAGCCATACCGGCTGGTTCCTGACCCCGC
GTAATTTCCGCACCGACTGGGAAGTGATTCCCGACCTGCGCCGCTTTGCCGAACTGCGCTTTCTGGACCGCTTCGACATC
GTGATGCCGGTGCTGCTGGCGCTGGGCCTGTACCTGCTCGGCGACTGGCTGGCAGTGGCTGCGCCCGCGCTGAAAACCAG
CGGCGCGCAGTTGTTGGTGTGGGGCTTTGTGATCTCCACCGTGGCGTTGTTCCATGCCACCTTCACCATCAACTCGCTGG
CGCATCGTTTCGGCAGCCGGCGGTTCGACACCCGCGACGACAGCCGCAACAACTGGCTGCTGGCCTTGCTCACCTTCGGC
GAAGGCTGGCACAACAATCACCATTTCTTCCCAGGCTCGGCGCGCCAGGGATTGCGATGGTGGGAATACGACATGACCTG
GTACGGACTCACCGCGATGTCGTGGGTGGGGCTGGTGTGGGACCTCAAGCCGATGCCGAAGCTGCTCACCCAGCGCGCCG
AACGGGTGAAGCGATGA

Upstream 100 bases:

>100_bases
GCCGAGCACTGGCCTGGACCCTCACGCCGCAGCGCCGCAGCCCGCCACCGCACCACCGCGTGGCGGGCTGGCCGCACGCG
TCGGCAGCCTGCGGCGCTGG

Downstream 100 bases:

>100_bases
GCGAGGGCAGAATTGCCGTGGTCGGCAGCGGAGTCGCCGGCCTCGGTGCAGCGTGGCTGTTGTCGCGGCGCTACGAGGTG
ACCTTGTTCGAGGCCGCCGA

Product: delta 9 acyl-lipid fatty acid desaturase

Products: NA

Alternate protein names: Fatty Acid Desaturase; Delta-9 Acyl-Phospholipid Desaturase; Fatty-Acid Desaturase; Delta-9 Desaturase; Acyl-CoA Desaturase; Fatty Acid Desaturase Subfamily; Delta 9 Acyl-Lipid Fatty Acid Desaturase; Fatty Acid Desaturase Family Proteiin; Stearoyl-CoA Desaturase; Fatty Acid Desaturase Domain Protein; Fatty Acid Desaturase Family Protein; Palmitoyl-Monogalactosyldiacylglycerol Delta-7 Desaturase; Delta-9 Acyl-Lipid Desaturase; Delta 9 Acyl-Lipid Desaturase; Membrane-Bound Fatty Acid Desaturase; Long Chain Acyl-CoA Desaturase; Delta-9 Fatty Acid Desaturase; Fatty-Acid Desaturase Transmenbrane Protein; Delta-9 Fatty Ac Id Desaturase; Fatty Acid-CoA Desaturase; Acyl-Coa Desaturase; Delta-9-Acyl-Lipid Fatty Acid Desaturase; Syn-2 Delta 9 Acyl-Lipid Fatty Acid Desaturase; Eucaryotic Stearoyl-CoA 9-Desaturase; Fatty Acid Desaturase Protein

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MDSQTDEPLDEARADRIDWLRAVPFIALHLACLAVFWVGASWFAVGMAVALYALRMFALTGFYHRYFSHRAFKTSRVLQF
VFAAIGATCVQRGPLWWAAHHRNHHRHTDTGRDPHSPAQHGFWWSHTGWFLTPRNFRTDWEVIPDLRRFAELRFLDRFDI
VMPVLLALGLYLLGDWLAVAAPALKTSGAQLLVWGFVISTVALFHATFTINSLAHRFGSRRFDTRDDSRNNWLLALLTFG
EGWHNNHHFFPGSARQGLRWWEYDMTWYGLTAMSWVGLVWDLKPMPKLLTQRAERVKR

Sequences:

>Translated_298_residues
MDSQTDEPLDEARADRIDWLRAVPFIALHLACLAVFWVGASWFAVGMAVALYALRMFALTGFYHRYFSHRAFKTSRVLQF
VFAAIGATCVQRGPLWWAAHHRNHHRHTDTGRDPHSPAQHGFWWSHTGWFLTPRNFRTDWEVIPDLRRFAELRFLDRFDI
VMPVLLALGLYLLGDWLAVAAPALKTSGAQLLVWGFVISTVALFHATFTINSLAHRFGSRRFDTRDDSRNNWLLALLTFG
EGWHNNHHFFPGSARQGLRWWEYDMTWYGLTAMSWVGLVWDLKPMPKLLTQRAERVKR
>Mature_298_residues
MDSQTDEPLDEARADRIDWLRAVPFIALHLACLAVFWVGASWFAVGMAVALYALRMFALTGFYHRYFSHRAFKTSRVLQF
VFAAIGATCVQRGPLWWAAHHRNHHRHTDTGRDPHSPAQHGFWWSHTGWFLTPRNFRTDWEVIPDLRRFAELRFLDRFDI
VMPVLLALGLYLLGDWLAVAAPALKTSGAQLLVWGFVISTVALFHATFTINSLAHRFGSRRFDTRDDSRNNWLLALLTFG
EGWHNNHHFFPGSARQGLRWWEYDMTWYGLTAMSWVGLVWDLKPMPKLLTQRAERVKR

Specific function: Unknown

COG id: COG1398

COG function: function code I; Fatty-acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI53759151, Length=245, Percent_Identity=29.3877551020408, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI148596961, Length=289, Percent_Identity=28.0276816608997, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17561774, Length=302, Percent_Identity=28.476821192053, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17561776, Length=294, Percent_Identity=27.2108843537415, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17540878, Length=251, Percent_Identity=28.6852589641434, Blast_Score=94, Evalue=8e-20,
Organism=Saccharomyces cerevisiae, GI6321383, Length=257, Percent_Identity=35.0194552529183, Blast_Score=150, Evalue=3e-37,
Organism=Drosophila melanogaster, GI24646303, Length=316, Percent_Identity=27.8481012658228, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24646299, Length=316, Percent_Identity=27.8481012658228, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24646305, Length=316, Percent_Identity=27.8481012658228, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24646301, Length=316, Percent_Identity=27.8481012658228, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24646297, Length=316, Percent_Identity=27.8481012658228, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24662393, Length=292, Percent_Identity=27.3972602739726, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24646295, Length=305, Percent_Identity=28.1967213114754, Blast_Score=102, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24646500, Length=293, Percent_Identity=25.938566552901, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI21358571, Length=250, Percent_Identity=27.6, Blast_Score=95, Evalue=6e-20,
Organism=Drosophila melanogaster, GI21358573, Length=248, Percent_Identity=29.4354838709677, Blast_Score=89, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34664; Mature: 34664

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSQTDEPLDEARADRIDWLRAVPFIALHLACLAVFWVGASWFAVGMAVALYALRMFALT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFYHRYFSHRAFKTSRVLQFVFAAIGATCVQRGPLWWAAHHRNHHRHTDTGRDPHSPAQH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCC
GFWWSHTGWFLTPRNFRTDWEVIPDLRRFAELRFLDRFDIVMPVLLALGLYLLGDWLAVA
CCEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
APALKTSGAQLLVWGFVISTVALFHATFTINSLAHRFGSRRFDTRDDSRNNWLLALLTFG
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEC
EGWHNNHHFFPGSARQGLRWWEYDMTWYGLTAMSWVGLVWDLKPMPKLLTQRAERVKR
CCCCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDSQTDEPLDEARADRIDWLRAVPFIALHLACLAVFWVGASWFAVGMAVALYALRMFALT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFYHRYFSHRAFKTSRVLQFVFAAIGATCVQRGPLWWAAHHRNHHRHTDTGRDPHSPAQH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCC
GFWWSHTGWFLTPRNFRTDWEVIPDLRRFAELRFLDRFDIVMPVLLALGLYLLGDWLAVA
CCEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
APALKTSGAQLLVWGFVISTVALFHATFTINSLAHRFGSRRFDTRDDSRNNWLLALLTFG
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEC
EGWHNNHHFFPGSARQGLRWWEYDMTWYGLTAMSWVGLVWDLKPMPKLLTQRAERVKR
CCCCCCCCCCCCCHHHCCEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA