Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
---|---|
Accession | NC_003919 |
Length | 5,175,554 |
Click here to switch to the map view.
The map label for this gene is 21242126
Identifier: 21242126
GI number: 21242126
Start: 1581664
End: 1582446
Strand: Reverse
Name: 21242126
Synonym: XAC1373
Alternate gene names: NA
Gene position: 1582446-1581664 (Counterclockwise)
Preceding gene: 21242127
Following gene: 21242125
Centisome position: 30.58
GC content: 66.41
Gene sequence:
>783_bases ATGACTGCCTGGTCACTGCTGCATGTGGGCGTGTTCGCAAGCGTGGTGATGGTGGTCGGCTGGCTGTGGCAACGCCGCAG CGGCAACGCCGGCCCGGTGGATGTGTTGTGGGCGGGCTGCCTGGCGCTGGCGGCGCCGTATTGCGCATGGATGGCCGATG GCGCACTGCTACCGCGCGCGCTGGTGGCGGTGCTTGGGGGCGTGTGGGGGGCGCGTCTGGCGCTGCACCTGGGCGTGCGC GTATTCGGCGACCCGCACGAAGATGGCCGGTACCGCGCGTTGCGCGAGCACTGGAATGGCAGCCAGGGCAAATTTCTCGG TTTTTTCCTGGCGCAGGCCGTGGTGGTGGTGCTGTTCGCGGTGCCGTTCCTGGCCGCTGCGAGCAATCCACACGCGGAAT GGAGCGCATGGACAGGCATCGCGATCGTCGTGTGGTTGATCGCGGTCGGTGGCGAGGCATTGGCGGACCGGCAGTTGTCG GCGCACAAGGCCAACCCGGCCAATCGCGGCAAGACCTGCCGCACTGGTCTATGGCGTTATTCGCGCCACCCCAATTACTT TTTCGAGTTCGTGCACTGGTTCGCGTATCTGGCGCTGGCCGTCGGTGCCGGCCCGTGGCCGGTGGCGCTGTGCGCGCTCG GGCCGGTGGTGATGTTCGTGTTTCTGTATCGCTTCACCGGCATTCCTTATACCGAGCAGCAGGCGCTGCGCTCGCGTGGC GAGGACTATGCGCAGTACCAGCGCAGCACCAGCGCGTTCTTTCCACTTCCCCCTTCGTCCTGA
Upstream 100 bases:
>100_bases TCGCCGTGGGCATCGGCTGGGGCGTGGCCTGCGGCGTGTTGTCGCTGTATGCACGCCGGCTGGCGCGACCATTGCCCGAT GACCCCACTGGAGAACTGCA
Downstream 100 bases:
>100_bases GTTGCCTGGAGAGTTGCATGTCTACCGTTACCGTCCCGCCCTCCGCGCAGCCTGAAGAAGCCTTCGCCACGCGGCTCGCC GAATCCGGTGTGCTGCCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MTAWSLLHVGVFASVVMVVGWLWQRRSGNAGPVDVLWAGCLALAAPYCAWMADGALLPRALVAVLGGVWGARLALHLGVR VFGDPHEDGRYRALREHWNGSQGKFLGFFLAQAVVVVLFAVPFLAAASNPHAEWSAWTGIAIVVWLIAVGGEALADRQLS AHKANPANRGKTCRTGLWRYSRHPNYFFEFVHWFAYLALAVGAGPWPVALCALGPVVMFVFLYRFTGIPYTEQQALRSRG EDYAQYQRSTSAFFPLPPSS
Sequences:
>Translated_260_residues MTAWSLLHVGVFASVVMVVGWLWQRRSGNAGPVDVLWAGCLALAAPYCAWMADGALLPRALVAVLGGVWGARLALHLGVR VFGDPHEDGRYRALREHWNGSQGKFLGFFLAQAVVVVLFAVPFLAAASNPHAEWSAWTGIAIVVWLIAVGGEALADRQLS AHKANPANRGKTCRTGLWRYSRHPNYFFEFVHWFAYLALAVGAGPWPVALCALGPVVMFVFLYRFTGIPYTEQQALRSRG EDYAQYQRSTSAFFPLPPSS >Mature_259_residues TAWSLLHVGVFASVVMVVGWLWQRRSGNAGPVDVLWAGCLALAAPYCAWMADGALLPRALVAVLGGVWGARLALHLGVRV FGDPHEDGRYRALREHWNGSQGKFLGFFLAQAVVVVLFAVPFLAAASNPHAEWSAWTGIAIVVWLIAVGGEALADRQLSA HKANPANRGKTCRTGLWRYSRHPNYFFEFVHWFAYLALAVGAGPWPVALCALGPVVMFVFLYRFTGIPYTEQQALRSRGE DYAQYQRSTSAFFPLPPSS
Specific function: Unknown
COG id: COG3752
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI281365853, Length=213, Percent_Identity=27.6995305164319, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI28574404, Length=213, Percent_Identity=27.6995305164319, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI21355723, Length=213, Percent_Identity=27.6995305164319, Blast_Score=86, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28546; Mature: 28415
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: PS50244 S5A_REDUCTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAWSLLHVGVFASVVMVVGWLWQRRSGNAGPVDVLWAGCLALAAPYCAWMADGALLPRA CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH LVAVLGGVWGARLALHLGVRVFGDPHEDGRYRALREHWNGSQGKFLGFFLAQAVVVVLFA HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH VPFLAAASNPHAEWSAWTGIAIVVWLIAVGGEALADRQLSAHKANPANRGKTCRTGLWRY HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH SRHPNYFFEFVHWFAYLALAVGAGPWPVALCALGPVVMFVFLYRFTGIPYTEQQALRSRG CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC EDYAQYQRSTSAFFPLPPSS HHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure TAWSLLHVGVFASVVMVVGWLWQRRSGNAGPVDVLWAGCLALAAPYCAWMADGALLPRA CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH LVAVLGGVWGARLALHLGVRVFGDPHEDGRYRALREHWNGSQGKFLGFFLAQAVVVVLFA HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH VPFLAAASNPHAEWSAWTGIAIVVWLIAVGGEALADRQLSAHKANPANRGKTCRTGLWRY HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH SRHPNYFFEFVHWFAYLALAVGAGPWPVALCALGPVVMFVFLYRFTGIPYTEQQALRSRG CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC EDYAQYQRSTSAFFPLPPSS HHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA