Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
---|---|
Accession | NC_003919 |
Length | 5,175,554 |
Click here to switch to the map view.
The map label for this gene is leu [H]
Identifier: 21242103
GI number: 21242103
Start: 1558786
End: 1559886
Strand: Reverse
Name: leu [H]
Synonym: XAC1350
Alternate gene names: 21242103
Gene position: 1559886-1558786 (Counterclockwise)
Preceding gene: 77748579
Following gene: 21242101
Centisome position: 30.14
GC content: 63.67
Gene sequence:
>1101_bases ATGCTTTTCGAAACCCTCGATACCACCGGCCACGAGCAGGTGATTTTCTGTCACAACCGCGATGCCGGACTCAAGGCGAT CATCGCCCTGCACAGCACGCGCCTTGGGCCAGCGTTGGGTGGCGTGCGGATGCGCCCCTATGCCAGTAGCGAGGCGGCAC TCAACGACGCGCTGCGGCTGAGCCGCACCATGACCTACAAGAACGCCCTGGCCGGCCTGAATGTCGGCGGCGGCAAGGCG GTCATCATCGGCGACCCTCGGACCGACAAGACCGAAGCGCTGTTCCGCGCCTTCGGCCGATTCGTCGACACCCTCGGCGG GCGCTATATCACCTCCGAGGACGTCGGCACCGACGTCAACGACATGGAGCAGATCTACCTGGAAAGCGAGTACGTCACCG GCGTGCACCAGGTGCACCGCGGCTCCGGCGACCCTGCCCCGTTTACGGCCTATGGTGCGCTGCAGGCGCTGATGGCCTCG CTCAACCGCAAGCTCGGCCACGAAGAAGTCGGCAAGGCCAGTATCGCGATCCAGGGGCTGGGCCATATCGGCATGGAGTT GGTGAAGCTGCTCAAGGAGCGCGGCGCAAAACTCTATGTGGCCGACCTGAATCAGGCGTTGGTCGACCGCGCCGTGGCCG AATACGGCGCAGAAGCGGTGCGCCCGGATGAAATCCATCAGGTATCGGCCGACGTATTTGCTCCCTGCGCGCTGGAAGGC GCCATCAACGAAGACACGCTGCCGCAACTCAAGGCCAAGATCATCTGCGGCACCGCGAACAATCAGCTTGCCAGCGCCGC CATCGGCGAAGAGCTGCATCGGCGCGGCATTTTGTATGCGCCCGATTACGTGGTGAATGCCGGCGGGGTGATGAATGTGT CGCTGGAGATCGACGGCTACAACCGCGAGCGCGCGATGCGGCTGATCCGCAGCATCTATCACAACCTGGAAAAGGTTTTC GATCTGTCCACGCAGCTGGACGTTTCGCCGCAGCAGGCGGCCGATCAGATTGCCGAAGCGCGCATCGAAGCCATCAGCAA GCTCAAACTGCCGCTGGGCCGCACCGCACCGCGCTTCCTGCACAAGCTGCGCGGCGAGTGA
Upstream 100 bases:
>100_bases ATCGGACAGGATCTGCAAACGTCGCGTTTTTTGTTTCCCACGGCACGGGTGCATGCCCGGCTTCAGGGAAGGCACATCAC GCAGCCCCGCGGAGCCTTCG
Downstream 100 bases:
>100_bases AACCCTGTCCAGGCACGCTGCCTGGACAGGGACCACATGCCTCAGCCAGGCAAGGCGCCGATCAGAAATCGGCGCTGTAT CGCAGGCTCAGCGCACGGTC
Product: leucine dehydrogenase
Products: NA
Alternate protein names: LeuDH [H]
Number of amino acids: Translated: 366; Mature: 366
Protein sequence:
>366_residues MLFETLDTTGHEQVIFCHNRDAGLKAIIALHSTRLGPALGGVRMRPYASSEAALNDALRLSRTMTYKNALAGLNVGGGKA VIIGDPRTDKTEALFRAFGRFVDTLGGRYITSEDVGTDVNDMEQIYLESEYVTGVHQVHRGSGDPAPFTAYGALQALMAS LNRKLGHEEVGKASIAIQGLGHIGMELVKLLKERGAKLYVADLNQALVDRAVAEYGAEAVRPDEIHQVSADVFAPCALEG AINEDTLPQLKAKIICGTANNQLASAAIGEELHRRGILYAPDYVVNAGGVMNVSLEIDGYNRERAMRLIRSIYHNLEKVF DLSTQLDVSPQQAADQIAEARIEAISKLKLPLGRTAPRFLHKLRGE
Sequences:
>Translated_366_residues MLFETLDTTGHEQVIFCHNRDAGLKAIIALHSTRLGPALGGVRMRPYASSEAALNDALRLSRTMTYKNALAGLNVGGGKA VIIGDPRTDKTEALFRAFGRFVDTLGGRYITSEDVGTDVNDMEQIYLESEYVTGVHQVHRGSGDPAPFTAYGALQALMAS LNRKLGHEEVGKASIAIQGLGHIGMELVKLLKERGAKLYVADLNQALVDRAVAEYGAEAVRPDEIHQVSADVFAPCALEG AINEDTLPQLKAKIICGTANNQLASAAIGEELHRRGILYAPDYVVNAGGVMNVSLEIDGYNRERAMRLIRSIYHNLEKVF DLSTQLDVSPQQAADQIAEARIEAISKLKLPLGRTAPRFLHKLRGE >Mature_366_residues MLFETLDTTGHEQVIFCHNRDAGLKAIIALHSTRLGPALGGVRMRPYASSEAALNDALRLSRTMTYKNALAGLNVGGGKA VIIGDPRTDKTEALFRAFGRFVDTLGGRYITSEDVGTDVNDMEQIYLESEYVTGVHQVHRGSGDPAPFTAYGALQALMAS LNRKLGHEEVGKASIAIQGLGHIGMELVKLLKERGAKLYVADLNQALVDRAVAEYGAEAVRPDEIHQVSADVFAPCALEG AINEDTLPQLKAKIICGTANNQLASAAIGEELHRRGILYAPDYVVNAGGVMNVSLEIDGYNRERAMRLIRSIYHNLEKVF DLSTQLDVSPQQAADQIAEARIEAISKLKLPLGRTAPRFLHKLRGE
Specific function: Functions catabolically in the bacterial metabolism of branched-chain L-amino acids, and plays an important role in spore germination in cooperation with alanine dehydrogenase [H]
COG id: COG0334
COG function: function code E; Glutamate dehydrogenase/leucine dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Glu/Leu/Phe/Val dehydrogenases family [H]
Homologues:
Organism=Drosophila melanogaster, GI45553475, Length=382, Percent_Identity=25.130890052356, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI45549226, Length=369, Percent_Identity=24.9322493224932, Blast_Score=70, Evalue=2e-12,
Paralogues:
None
Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 9362 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006095 - InterPro: IPR006096 - InterPro: IPR006097 - InterPro: IPR016211 - InterPro: IPR016040 [H]
Pfam domain/function: PF00208 ELFV_dehydrog; PF02812 ELFV_dehydrog_N [H]
EC number: =1.4.1.9 [H]
Molecular weight: Translated: 39713; Mature: 39713
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: PS00074 GLFV_DEHYDROGENASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFETLDTTGHEQVIFCHNRDAGLKAIIALHSTRLGPALGGVRMRPYASSEAALNDALRL CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCHHHCCCEECCCCCCHHHHHHHHHH SRTMTYKNALAGLNVGGGKAVIIGDPRTDKTEALFRAFGRFVDTLGGRYITSEDVGTDVN HHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCHH DMEQIYLESEYVTGVHQVHRGSGDPAPFTAYGALQALMASLNRKLGHEEVGKASIAIQGL HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCHHEEEHHH GHIGMELVKLLKERGAKLYVADLNQALVDRAVAEYGAEAVRPDEIHQVSADVFAPCALEG HHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHCC AINEDTLPQLKAKIICGTANNQLASAAIGEELHRRGILYAPDYVVNAGGVMNVSLEIDGY CCCCCCHHHHHEEEEEECCCCHHHHHHHHHHHHHCCCEECCCEEEECCCEEEEEEEECCC NRERAMRLIRSIYHNLEKVFDLSTQLDVSPQQAADQIAEARIEAISKLKLPLGRTAPRFL CHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH HKLRGE HHHCCC >Mature Secondary Structure MLFETLDTTGHEQVIFCHNRDAGLKAIIALHSTRLGPALGGVRMRPYASSEAALNDALRL CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCHHHCCCEECCCCCCHHHHHHHHHH SRTMTYKNALAGLNVGGGKAVIIGDPRTDKTEALFRAFGRFVDTLGGRYITSEDVGTDVN HHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCHH DMEQIYLESEYVTGVHQVHRGSGDPAPFTAYGALQALMASLNRKLGHEEVGKASIAIQGL HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHCCHHEEEHHH GHIGMELVKLLKERGAKLYVADLNQALVDRAVAEYGAEAVRPDEIHQVSADVFAPCALEG HHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHCC AINEDTLPQLKAKIICGTANNQLASAAIGEELHRRGILYAPDYVVNAGGVMNVSLEIDGY CCCCCCHHHHHEEEEEECCCCHHHHHHHHHHHHHCCCEECCCEEEECCCEEEEEEEECCC NRERAMRLIRSIYHNLEKVFDLSTQLDVSPQQAADQIAEARIEAISKLKLPLGRTAPRFL CHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH HKLRGE HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3069133; 1400267 [H]