Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
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Accession | NC_003919 |
Length | 5,175,554 |
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The map label for this gene is bga [H]
Identifier: 21242061
GI number: 21242061
Start: 1505897
End: 1508461
Strand: Reverse
Name: bga [H]
Synonym: XAC1308
Alternate gene names: 21242061
Gene position: 1508461-1505897 (Counterclockwise)
Preceding gene: 21242062
Following gene: 21242056
Centisome position: 29.15
GC content: 65.96
Gene sequence:
>2565_bases ATGAGCGGCATCAATCGGCGCGAGTTGCTGCGCGGCATGCTTGCCAGTGGGGTGAGCGCCGCACTGCCGGTGGGCGCAGC CGGCACAGTGGCGTCGGCTGGCGCGACGGCTGCACCTGCAGCCAAGAACAGCGTCTCGACATCGGCACTAGGCGACGCAG CGCTGGCACCGCGTGAGCGTCTGCTGTTCGACTTCGGTTGGCGCTTCCACCTGGGCCATGGCAGCGATGCGGCGCGCGAT TTCGAATTCGGCACGTTCCAACGCACCTTCGCCAAGGCCGGCAAGGACACCGCGACCGCCGCGCAACTGGCGTTCGACGA CAGTGCCTGGCAGCAGGTGGATCTGCCGCACGACTGGGCCGTCGGCCTGCCGTTTCGGCAGGAGCCCATCTCGGCCTCCA TCACCGAGGAAGACCCGGCCGCTGCGCACGGCTACAAGCCGCTGGGCACGAGTTTCCCGGAGAACAGCGTGGGCTGGTAT CGGCGCACGCTTCAGATTCCGGCCAGCGACCTGGGCAAGCGCATCAGCCTGGTGTTCGATGGCGTGTTTCGTGAGTGCAT CGTGTTCTGCAATGGACACATCGTCGGCCGCAACGCGAGCGGCTACTGCGGCTTCGAAGTCGACCTCAGCGACGTGCTCG ACTACGGCAAGCCCAACATCATCGCCATCCGCGTGGATGCCACGCTGGGCGAAGGCTGGTTCTACGAAGGCGCCGGCATC TACCGGCACGTGTGGCTACAGAAGACCGACCCAGTCCATATCCCGCAAGACGGCGTGTTCGTGCGCAGCACCGTGCAGGA TGGCAACGCCACTGCGCAGCTCTCCACCGAAGTGCGCAACGAGGGCAGCGCGCCGCGCCGATGCGTGGTGCAGGCGCGCA TCACCGCACCGGATGGACGCACCGTGGCGCAAGCGTCCAGCGCAGTGGCCACCGTCGCGCCCGGCCAGGTGCAGGTGGTC GAACAGACCTTGCCGCTCGGGCAGGCGGTGCTGTGGTCGATCGACGCCCCGCAGCTCTACCACCTGACTACCAGCGTGCA TAGCGACGGCACTGCAGTCGATGCGCTGGTGACGCCGTTCGGCGTACGCAGCATCGCCTTCGATGCACAACGCGGTTTCC TGTTGAACGGCGCACCGCTCAAGCTGCATGGCACCAACAATCACCAGGACCACGCGGGCGTCGGCACCGCCATTCCGGAC GCCTTGCATGCATGGCGCCTGCGCCAGCTCAAGTCGATGGGCTGCAATGCCTACCGCAGTTCGCACAATCCGGCCACGCC GGAATTACTCGCGCTGTGCGACCGCCTCGGCATGTTGGTGATCGAAGAAACCCGCCGCATGTCCACCGACCCGGAAGCGA TGGGCGAACTGGAAACGATGGTGCGGCGTGGCCGCAATCATCCCAGCGTCATCCTGTGGTCGCTCGGCAACGAAGAGCCG CAGCAAGTGACCGCGCGCGGTGCACGCATCGTGACCCGCATGCAACAACGCGTGCGCCAGCTGGATCCCACCCGCCCCAC GACCTTCGCGATGGACAAAGGTTTTGGCGATGGCGTGGGCCAGGTGGTGGATGTGGTCGGCTTCAACTACCGCACCAGCC AGATGGACGGCTTCCACGCGCAATACCCCAACATCCCGATCTACGGCAGCGAAACCGGCAGCACCGTGTCGGTGCGCGGC AACTATCGGCGCGATGACCAACGCGGTTACACCCGCGCCTACGACCTGGACCACCCCTGGTGGGCCAGCACCGCCGAAGC CTGGTGGAGCTATGTCGCGCAACGCCCCTACATTGCCGGCGGCTTCATCTGGACCGGCTTCGACTATCGCGGCGAGCCCA CGCCCTACAACCGCTGGCCCAATGTGGCTTCGCAATTCGGCGTACTCGATAGCTGCGGTTTTCCGAAAGACAATTACTGG TACTACCGCGCGCAATGGACCAGCGAACCGGTACTGCATCTGTTCCCGCACTGGAACTGGGACGGCTTGCTGGAGCCCGA CGACAACGGCCGCATCGCGGTCTGGTGCCATAGCAATCTCGAGGCGGTGGAACTGCTGGTCAATGGCGTCAGCCAGGGCC TGCAGCAGGTGCCGGCCTACGGCCATGTCGAATGGCGCGTGGTCTATGCGCCCGGCACGATCGAAGCGCGCGGCTATCGC GGCGGCAAGCTGGTACTCAGCGAGCGTCGCGAAACCACAGGCAACCCGGCGGCGATTCGCTTGAGCTGCGATCGCAACAC GCTGCGTGCCGATGCCGAAGATGTGGCCGTGGTGAAGGTGGAAATCCTCGATGCACAAGGCCGCCTGGTTCCGACCGCCG ACAGCCTGGTGCAGTTCGCGCTACGCGGACCCGCACGGCTGATTGGGGTCGGCAATGGCGATCCCAGCAGCCACGAGGAC GACAAGGCGCCGCGGCGCAAGGCGTTCAACGGCCTGTGTGCGGCACTGCTGCAAACCACGCGCAGCAGCGGCGAAATTGT GCTGCAGGCCACCGCGCCTGGGCTGACCTCGTCCACGCTACGCCTGCCTGCCGAGCCCACGCGATCGCGCGCATCGGTGG CTTGA
Upstream 100 bases:
>100_bases ACCCGTATACCGGTGTGCCTGCAGCGATCAAAGCTGACGCGCGCAAGCGTCATGCGGACAGCCAGCACGTCCCTGCAGAG GCCGAAAAAAGGACGCAGCC
Downstream 100 bases:
>100_bases AACGCACGGCGACCGAACGTGCTGCGTTACCTGGGCCAGTGGTGGCCTCGGTAGCGTCGCGATGCCATAGGCGAGTCGAA GGCCATCCATCGGTGTGTTT
Product: beta-galactosidase
Products: NA
Alternate protein names: Beta-gal; Lactase [H]
Number of amino acids: Translated: 854; Mature: 853
Protein sequence:
>854_residues MSGINRRELLRGMLASGVSAALPVGAAGTVASAGATAAPAAKNSVSTSALGDAALAPRERLLFDFGWRFHLGHGSDAARD FEFGTFQRTFAKAGKDTATAAQLAFDDSAWQQVDLPHDWAVGLPFRQEPISASITEEDPAAAHGYKPLGTSFPENSVGWY RRTLQIPASDLGKRISLVFDGVFRECIVFCNGHIVGRNASGYCGFEVDLSDVLDYGKPNIIAIRVDATLGEGWFYEGAGI YRHVWLQKTDPVHIPQDGVFVRSTVQDGNATAQLSTEVRNEGSAPRRCVVQARITAPDGRTVAQASSAVATVAPGQVQVV EQTLPLGQAVLWSIDAPQLYHLTTSVHSDGTAVDALVTPFGVRSIAFDAQRGFLLNGAPLKLHGTNNHQDHAGVGTAIPD ALHAWRLRQLKSMGCNAYRSSHNPATPELLALCDRLGMLVIEETRRMSTDPEAMGELETMVRRGRNHPSVILWSLGNEEP QQVTARGARIVTRMQQRVRQLDPTRPTTFAMDKGFGDGVGQVVDVVGFNYRTSQMDGFHAQYPNIPIYGSETGSTVSVRG NYRRDDQRGYTRAYDLDHPWWASTAEAWWSYVAQRPYIAGGFIWTGFDYRGEPTPYNRWPNVASQFGVLDSCGFPKDNYW YYRAQWTSEPVLHLFPHWNWDGLLEPDDNGRIAVWCHSNLEAVELLVNGVSQGLQQVPAYGHVEWRVVYAPGTIEARGYR GGKLVLSERRETTGNPAAIRLSCDRNTLRADAEDVAVVKVEILDAQGRLVPTADSLVQFALRGPARLIGVGNGDPSSHED DKAPRRKAFNGLCAALLQTTRSSGEIVLQATAPGLTSSTLRLPAEPTRSRASVA
Sequences:
>Translated_854_residues MSGINRRELLRGMLASGVSAALPVGAAGTVASAGATAAPAAKNSVSTSALGDAALAPRERLLFDFGWRFHLGHGSDAARD FEFGTFQRTFAKAGKDTATAAQLAFDDSAWQQVDLPHDWAVGLPFRQEPISASITEEDPAAAHGYKPLGTSFPENSVGWY RRTLQIPASDLGKRISLVFDGVFRECIVFCNGHIVGRNASGYCGFEVDLSDVLDYGKPNIIAIRVDATLGEGWFYEGAGI YRHVWLQKTDPVHIPQDGVFVRSTVQDGNATAQLSTEVRNEGSAPRRCVVQARITAPDGRTVAQASSAVATVAPGQVQVV EQTLPLGQAVLWSIDAPQLYHLTTSVHSDGTAVDALVTPFGVRSIAFDAQRGFLLNGAPLKLHGTNNHQDHAGVGTAIPD ALHAWRLRQLKSMGCNAYRSSHNPATPELLALCDRLGMLVIEETRRMSTDPEAMGELETMVRRGRNHPSVILWSLGNEEP QQVTARGARIVTRMQQRVRQLDPTRPTTFAMDKGFGDGVGQVVDVVGFNYRTSQMDGFHAQYPNIPIYGSETGSTVSVRG NYRRDDQRGYTRAYDLDHPWWASTAEAWWSYVAQRPYIAGGFIWTGFDYRGEPTPYNRWPNVASQFGVLDSCGFPKDNYW YYRAQWTSEPVLHLFPHWNWDGLLEPDDNGRIAVWCHSNLEAVELLVNGVSQGLQQVPAYGHVEWRVVYAPGTIEARGYR GGKLVLSERRETTGNPAAIRLSCDRNTLRADAEDVAVVKVEILDAQGRLVPTADSLVQFALRGPARLIGVGNGDPSSHED DKAPRRKAFNGLCAALLQTTRSSGEIVLQATAPGLTSSTLRLPAEPTRSRASVA >Mature_853_residues SGINRRELLRGMLASGVSAALPVGAAGTVASAGATAAPAAKNSVSTSALGDAALAPRERLLFDFGWRFHLGHGSDAARDF EFGTFQRTFAKAGKDTATAAQLAFDDSAWQQVDLPHDWAVGLPFRQEPISASITEEDPAAAHGYKPLGTSFPENSVGWYR RTLQIPASDLGKRISLVFDGVFRECIVFCNGHIVGRNASGYCGFEVDLSDVLDYGKPNIIAIRVDATLGEGWFYEGAGIY RHVWLQKTDPVHIPQDGVFVRSTVQDGNATAQLSTEVRNEGSAPRRCVVQARITAPDGRTVAQASSAVATVAPGQVQVVE QTLPLGQAVLWSIDAPQLYHLTTSVHSDGTAVDALVTPFGVRSIAFDAQRGFLLNGAPLKLHGTNNHQDHAGVGTAIPDA LHAWRLRQLKSMGCNAYRSSHNPATPELLALCDRLGMLVIEETRRMSTDPEAMGELETMVRRGRNHPSVILWSLGNEEPQ QVTARGARIVTRMQQRVRQLDPTRPTTFAMDKGFGDGVGQVVDVVGFNYRTSQMDGFHAQYPNIPIYGSETGSTVSVRGN YRRDDQRGYTRAYDLDHPWWASTAEAWWSYVAQRPYIAGGFIWTGFDYRGEPTPYNRWPNVASQFGVLDSCGFPKDNYWY YRAQWTSEPVLHLFPHWNWDGLLEPDDNGRIAVWCHSNLEAVELLVNGVSQGLQQVPAYGHVEWRVVYAPGTIEARGYRG GKLVLSERRETTGNPAAIRLSCDRNTLRADAEDVAVVKVEILDAQGRLVPTADSLVQFALRGPARLIGVGNGDPSSHEDD KAPRRKAFNGLCAALLQTTRSSGEIVLQATAPGLTSSTLRLPAEPTRSRASVA
Specific function: The Wild-Type Enzyme Is An Ineffective Lactase. Two Classes Of Point Mutations Dramatically Improve Activity Of The Enzyme. [C]
COG id: COG3250
COG function: function code G; Beta-galactosidase/beta-glucuronidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 2 family [H]
Homologues:
Organism=Homo sapiens, GI268834192, Length=521, Percent_Identity=25.5278310940499, Blast_Score=134, Evalue=5e-31, Organism=Escherichia coli, GI48994920, Length=418, Percent_Identity=28.9473684210526, Blast_Score=133, Evalue=4e-32, Organism=Escherichia coli, GI1786539, Length=537, Percent_Identity=27.3743016759777, Blast_Score=117, Evalue=2e-27, Organism=Escherichia coli, GI1787903, Length=425, Percent_Identity=26.8235294117647, Blast_Score=112, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17510825, Length=410, Percent_Identity=26.5853658536585, Blast_Score=113, Evalue=4e-25, Organism=Drosophila melanogaster, GI62471735, Length=426, Percent_Identity=28.4037558685446, Blast_Score=147, Evalue=3e-35, Organism=Drosophila melanogaster, GI24655438, Length=426, Percent_Identity=28.4037558685446, Blast_Score=147, Evalue=3e-35, Organism=Drosophila melanogaster, GI19922582, Length=426, Percent_Identity=28.4037558685446, Blast_Score=147, Evalue=4e-35, Organism=Drosophila melanogaster, GI24651745, Length=428, Percent_Identity=28.2710280373832, Blast_Score=134, Evalue=3e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003344 - InterPro: IPR008979 - InterPro: IPR006101 - InterPro: IPR013812 - InterPro: IPR006104 - InterPro: IPR006102 - InterPro: IPR006103 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF00703 Glyco_hydro_2; PF02836 Glyco_hydro_2_C; PF02837 Glyco_hydro_2_N [H]
EC number: =3.2.1.23 [H]
Molecular weight: Translated: 93156; Mature: 93025
Theoretical pI: Translated: 6.82; Mature: 6.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGINRRELLRGMLASGVSAALPVGAAGTVASAGATAAPAAKNSVSTSALGDAALAPRER CCCCCHHHHHHHHHHCCCHHHCCCCCCCCHHCCCCCCCCCCCCCCCHHHCCCHHCCCHHH LLFDFGWRFHLGHGSDAARDFEFGTFQRTFAKAGKDTATAAQLAFDDSAWQQVDLPHDWA HEEECCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCHHHHEEEECCCCCCCCCCCCCCE VGLPFRQEPISASITEEDPAAAHGYKPLGTSFPENSVGWYRRTLQIPASDLGKRISLVFD ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCEEHHHHH GVFRECIVFCNGHIVGRNASGYCGFEVDLSDVLDYGKPNIIAIRVDATLGEGWFYEGAGI HHHHHHHHHCCCEEEECCCCCEEEEEEEHHHHHHCCCCCEEEEEEEEEECCCEEECCCCE YRHVWLQKTDPVHIPQDGVFVRSTVQDGNATAQLSTEVRNEGSAPRRCVVQARITAPDGR EEEEEEECCCCEECCCCCEEEEEEECCCCCEEEEEHHHHCCCCCCCEEEEEEEEECCCCC TVAQASSAVATVAPGQVQVVEQTLPLGQAVLWSIDAPQLYHLTTSVHSDGTAVDALVTPF CHHHHCCCEEEECCCCEEEEEHHCCCCCEEEEECCCCEEEEEEEECCCCCCCHHHHHCCC GVRSIAFDAQRGFLLNGAPLKLHGTNNHQDHAGVGTAIPDALHAWRLRQLKSMGCNAYRS CHHHEEEECCCCEEECCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHC SHNPATPELLALCDRLGMLVIEETRRMSTDPEAMGELETMVRRGRNHPSVILWSLGNEEP CCCCCCHHHHHHHHHHCCEEEEHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCH QQVTARGARIVTRMQQRVRQLDPTRPTTFAMDKGFGDGVGQVVDVVGFNYRTSQMDGFHA HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHCCCEECCCCCCCCC QYPNIPIYGSETGSTVSVRGNYRRDDQRGYTRAYDLDHPWWASTAEAWWSYVAQRPYIAG CCCCCEEEECCCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCEEEC GFIWTGFDYRGEPTPYNRWPNVASQFGVLDSCGFPKDNYWYYRAQWTSEPVLHLFPHWNW CEEEECCCCCCCCCCCCCCCCHHHHCCCHHCCCCCCCCEEEEEEECCCCCEEEECCCCCC DGLLEPDDNGRIAVWCHSNLEAVELLVNGVSQGLQQVPAYGHVEWRVVYAPGTIEARGYR CCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEECCCC GGKLVLSERRETTGNPAAIRLSCDRNTLRADAEDVAVVKVEILDAQGRLVPTADSLVQFA CCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEECCHHHHHHHH LRGPARLIGVGNGDPSSHEDDKAPRRKAFNGLCAALLQTTRSSGEIVLQATAPGLTSSTL HCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEE RLPAEPTRSRASVA ECCCCCCCCCCCCC >Mature Secondary Structure SGINRRELLRGMLASGVSAALPVGAAGTVASAGATAAPAAKNSVSTSALGDAALAPRER CCCCHHHHHHHHHHCCCHHHCCCCCCCCHHCCCCCCCCCCCCCCCHHHCCCHHCCCHHH LLFDFGWRFHLGHGSDAARDFEFGTFQRTFAKAGKDTATAAQLAFDDSAWQQVDLPHDWA HEEECCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCHHHHEEEECCCCCCCCCCCCCCE VGLPFRQEPISASITEEDPAAAHGYKPLGTSFPENSVGWYRRTLQIPASDLGKRISLVFD ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCEEHHHHH GVFRECIVFCNGHIVGRNASGYCGFEVDLSDVLDYGKPNIIAIRVDATLGEGWFYEGAGI HHHHHHHHHCCCEEEECCCCCEEEEEEEHHHHHHCCCCCEEEEEEEEEECCCEEECCCCE YRHVWLQKTDPVHIPQDGVFVRSTVQDGNATAQLSTEVRNEGSAPRRCVVQARITAPDGR EEEEEEECCCCEECCCCCEEEEEEECCCCCEEEEEHHHHCCCCCCCEEEEEEEEECCCCC TVAQASSAVATVAPGQVQVVEQTLPLGQAVLWSIDAPQLYHLTTSVHSDGTAVDALVTPF CHHHHCCCEEEECCCCEEEEEHHCCCCCEEEEECCCCEEEEEEEECCCCCCCHHHHHCCC GVRSIAFDAQRGFLLNGAPLKLHGTNNHQDHAGVGTAIPDALHAWRLRQLKSMGCNAYRS CHHHEEEECCCCEEECCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHC SHNPATPELLALCDRLGMLVIEETRRMSTDPEAMGELETMVRRGRNHPSVILWSLGNEEP CCCCCCHHHHHHHHHHCCEEEEHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCH QQVTARGARIVTRMQQRVRQLDPTRPTTFAMDKGFGDGVGQVVDVVGFNYRTSQMDGFHA HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHCCCEECCCCCCCCC QYPNIPIYGSETGSTVSVRGNYRRDDQRGYTRAYDLDHPWWASTAEAWWSYVAQRPYIAG CCCCCEEEECCCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCEEEC GFIWTGFDYRGEPTPYNRWPNVASQFGVLDSCGFPKDNYWYYRAQWTSEPVLHLFPHWNW CEEEECCCCCCCCCCCCCCCCHHHHCCCHHCCCCCCCCEEEEEEECCCCCEEEECCCCCC DGLLEPDDNGRIAVWCHSNLEAVELLVNGVSQGLQQVPAYGHVEWRVVYAPGTIEARGYR CCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEECCCC GGKLVLSERRETTGNPAAIRLSCDRNTLRADAEDVAVVKVEILDAQGRLVPTADSLVQFA CCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEECCHHHHHHHH LRGPARLIGVGNGDPSSHEDDKAPRRKAFNGLCAALLQTTRSSGEIVLQATAPGLTSSTL HCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEE RLPAEPTRSRASVA ECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA