Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
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Accession | NC_003919 |
Length | 5,175,554 |
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The map label for this gene is ycjY [C]
Identifier: 21241524
GI number: 21241524
Start: 892952
End: 894532
Strand: Direct
Name: ycjY [C]
Synonym: XAC0753
Alternate gene names: 21241524
Gene position: 892952-894532 (Clockwise)
Preceding gene: 21241523
Following gene: 21241525
Centisome position: 17.25
GC content: 66.16
Gene sequence:
>1581_bases ATGAGCAAGCGTTGGATCGGGAGCATCGCCGCACTGGCGTTGCTGTTGGCATCGGCGTCGGCCGTGGCGGGCGCCTTCAG CAAGACCTATGAACGCATTCCAGGCTGGGACGGCGCCCAAATGGGCGCATTGGTGCTGGTGCCGCAAGGGCAGGGCGCCG GGCCGTTTCCGCTGATCGTGATGCCGGCCAGCTGGTCGCTGCCCAATCTGGAATATCTGGGGCGCGCCACCCAACTGGCC AGCGACGGCTACGTGGTGGTCAGCTATACCTCGCGTGGATTCTGGGATTCGGCTGGGCAGATCGATATCGCCGGGCCGGA CACGGTGGAAGACGTCAGTGCGGTGATCGACTGGGCATTGGCGCATACACCGGCCAATCCCAATGCGATCGGCGCGTCGG GCATCTCGTACGGCGCAGGCATCAGCCTGCTGGCGGCCGAGCGCGACCCGCGTATCAAGGCGGTGGCCGCGCTCAGCGGT TGGGCCGATCTGGAAGCCTCGCTGTATTCCAATCGCACGGTGAGCCAGCAGGGCGTGGGACTGCTGGTGGGTGCGGGCGC ACTGACCGGCCGGGCCGGCCCGGATCTGGCGCAGATTGGCGCACGCGTGGCGCAAGGCGATTACGACGGCGCGGTGCAGG GCTTCCTGCCGCAGGCCGCCTCGCGCAGCCCTGCGACCGATGTGGCAGCGCTCAATGTGCGTGGTACCGCGGTCCTGTTG GGTAACGCCTTCAACGACGGATTGTTTCCGCCCAATCAGACCATTGCGTTCTTCAACCAGTTGCGTGGCCCCAAACAACT GCTGCTCAGCCAGGGCGATCACGCCACCGCAGAGCTGCCCGGCGCATTGGGGTTACCGAATGAGATCTATACCGCGACCA CGCGCTGGTTCGATCGCCATCTCAAGCAGCTTCGCAACGGCGTGGATGCAGAAGCGCCAGTGCGGCTATCGCCACGTGCG GGCCAATGGCTGGACTATCCGGACTGGGCATCGGTCCAACAGGCCACGACACAGCTTGGTCTGTCCGCACCAGCAGGGTT GCTGAGCCCCACCGGTGGATTGACCGGAGGGACGGCGAGCGGTTGGCAATGGCGCATCGCCACCGACGTGCCGAGCGTGG CCGATTCCGGGGTGGTGCTGGTCAGCGGTTTGCTGCAAGGCATCGGCCTGCCGGTGAGCACCTCCATTCCGCTGGTCAAC CGCGCCGCCGCCGCAGTGTGGGTCGGCTCGCCATCGAACGGCACCCGGCGCCTGGCCGGTCGCCCGTCGCTACGCGTCAC AGTGGTGCCCAGTCAGTCCAACGTCAGCCTTTTCGCGTATCTCTACTGCATGGATGCGCTGGGCGTGGCGAAACTGATTA CGCATGCGCCGTATTCGTTGCGCAATGCCACATCGGGGCGCGCAGTCACGCTGGACTGGCCACTGCAGGCGGCGGCAACC GAGATTCCCGCAGGGCAGCGATTGGTCTTGGTGATCGACACCCGCGACGCGCGCTATACCGATGCCAGCGAGGGCGGTGG CACGGTGACATTCACCTCGCCAGTTGCAGCGCCGTCCGTGTTGAACGTGCCGCTGCGGTAG
Upstream 100 bases:
>100_bases CCGTCTGGTACGTTCGCCACGTTCTCCCCCCCCCCAACCACGGATGCATCGCAGTTGCCGCTGGGCCATCCCGGCCCGGC TTTGCGTGGGAGACAGCAGC
Downstream 100 bases:
>100_bases GGCGGCACGCCGCATCTGCATCGATCCCAGGTCGCCCGCCGCGGTACTAGCGAGCAGCGGCGGATGCAGGCCATCCGCAG AACCCACATCTGCACCTGTC
Product: hypothetical protein
Products: NA
Alternate protein names: Peptidase S; Secreted Esterase/Lipase/Thioesterase Family Protein; S15 Family Peptidase; X-Pro Dipeptidyl-Peptidase Domain Protein; X-Pro Dipeptidyl-Peptidase Protein; S15-Family Peptidase; CocE/NonD Family Hydrolase; Hydrolase CocE/NonD Family Protein; Hydrolase
Number of amino acids: Translated: 526; Mature: 525
Protein sequence:
>526_residues MSKRWIGSIAALALLLASASAVAGAFSKTYERIPGWDGAQMGALVLVPQGQGAGPFPLIVMPASWSLPNLEYLGRATQLA SDGYVVVSYTSRGFWDSAGQIDIAGPDTVEDVSAVIDWALAHTPANPNAIGASGISYGAGISLLAAERDPRIKAVAALSG WADLEASLYSNRTVSQQGVGLLVGAGALTGRAGPDLAQIGARVAQGDYDGAVQGFLPQAASRSPATDVAALNVRGTAVLL GNAFNDGLFPPNQTIAFFNQLRGPKQLLLSQGDHATAELPGALGLPNEIYTATTRWFDRHLKQLRNGVDAEAPVRLSPRA GQWLDYPDWASVQQATTQLGLSAPAGLLSPTGGLTGGTASGWQWRIATDVPSVADSGVVLVSGLLQGIGLPVSTSIPLVN RAAAAVWVGSPSNGTRRLAGRPSLRVTVVPSQSNVSLFAYLYCMDALGVAKLITHAPYSLRNATSGRAVTLDWPLQAAAT EIPAGQRLVLVIDTRDARYTDASEGGGTVTFTSPVAAPSVLNVPLR
Sequences:
>Translated_526_residues MSKRWIGSIAALALLLASASAVAGAFSKTYERIPGWDGAQMGALVLVPQGQGAGPFPLIVMPASWSLPNLEYLGRATQLA SDGYVVVSYTSRGFWDSAGQIDIAGPDTVEDVSAVIDWALAHTPANPNAIGASGISYGAGISLLAAERDPRIKAVAALSG WADLEASLYSNRTVSQQGVGLLVGAGALTGRAGPDLAQIGARVAQGDYDGAVQGFLPQAASRSPATDVAALNVRGTAVLL GNAFNDGLFPPNQTIAFFNQLRGPKQLLLSQGDHATAELPGALGLPNEIYTATTRWFDRHLKQLRNGVDAEAPVRLSPRA GQWLDYPDWASVQQATTQLGLSAPAGLLSPTGGLTGGTASGWQWRIATDVPSVADSGVVLVSGLLQGIGLPVSTSIPLVN RAAAAVWVGSPSNGTRRLAGRPSLRVTVVPSQSNVSLFAYLYCMDALGVAKLITHAPYSLRNATSGRAVTLDWPLQAAAT EIPAGQRLVLVIDTRDARYTDASEGGGTVTFTSPVAAPSVLNVPLR >Mature_525_residues SKRWIGSIAALALLLASASAVAGAFSKTYERIPGWDGAQMGALVLVPQGQGAGPFPLIVMPASWSLPNLEYLGRATQLAS DGYVVVSYTSRGFWDSAGQIDIAGPDTVEDVSAVIDWALAHTPANPNAIGASGISYGAGISLLAAERDPRIKAVAALSGW ADLEASLYSNRTVSQQGVGLLVGAGALTGRAGPDLAQIGARVAQGDYDGAVQGFLPQAASRSPATDVAALNVRGTAVLLG NAFNDGLFPPNQTIAFFNQLRGPKQLLLSQGDHATAELPGALGLPNEIYTATTRWFDRHLKQLRNGVDAEAPVRLSPRAG QWLDYPDWASVQQATTQLGLSAPAGLLSPTGGLTGGTASGWQWRIATDVPSVADSGVVLVSGLLQGIGLPVSTSIPLVNR AAAAVWVGSPSNGTRRLAGRPSLRVTVVPSQSNVSLFAYLYCMDALGVAKLITHAPYSLRNATSGRAVTLDWPLQAAATE IPAGQRLVLVIDTRDARYTDASEGGGTVTFTSPVAAPSVLNVPLR
Specific function: Unknown
COG id: COG2936
COG function: function code R; Predicted acyl esterases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54457; Mature: 54326
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKRWIGSIAALALLLASASAVAGAFSKTYERIPGWDGAQMGALVLVPQGQGAGPFPLIV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCEEE MPASWSLPNLEYLGRATQLASDGYVVVSYTSRGFWDSAGQIDIAGPDTVEDVSAVIDWAL ECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHH AHTPANPNAIGASGISYGAGISLLAAERDPRIKAVAALSGWADLEASLYSNRTVSQQGVG HCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCE LLVGAGALTGRAGPDLAQIGARVAQGDYDGAVQGFLPQAASRSPATDVAALNVRGTAVLL EEEECCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCEEEEEECCEEEEE GNAFNDGLFPPNQTIAFFNQLRGPKQLLLSQGDHATAELPGALGLPNEIYTATTRWFDRH ECCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH LKQLRNGVDAEAPVRLSPRAGQWLDYPDWASVQQATTQLGLSAPAGLLSPTGGLTGGTAS HHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC GWQWRIATDVPSVADSGVVLVSGLLQGIGLPVSTSIPLVNRAAAAVWVGSPSNGTRRLAG CEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEECC RPSLRVTVVPSQSNVSLFAYLYCMDALGVAKLITHAPYSLRNATSGRAVTLDWPLQAAAT CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEECCCHHHHH EIPAGQRLVLVIDTRDARYTDASEGGGTVTFTSPVAAPSVLNVPLR CCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCEECCCCC >Mature Secondary Structure SKRWIGSIAALALLLASASAVAGAFSKTYERIPGWDGAQMGALVLVPQGQGAGPFPLIV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCEEE MPASWSLPNLEYLGRATQLASDGYVVVSYTSRGFWDSAGQIDIAGPDTVEDVSAVIDWAL ECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHH AHTPANPNAIGASGISYGAGISLLAAERDPRIKAVAALSGWADLEASLYSNRTVSQQGVG HCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCE LLVGAGALTGRAGPDLAQIGARVAQGDYDGAVQGFLPQAASRSPATDVAALNVRGTAVLL EEEECCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCEEEEEECCEEEEE GNAFNDGLFPPNQTIAFFNQLRGPKQLLLSQGDHATAELPGALGLPNEIYTATTRWFDRH ECCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH LKQLRNGVDAEAPVRLSPRAGQWLDYPDWASVQQATTQLGLSAPAGLLSPTGGLTGGTAS HHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC GWQWRIATDVPSVADSGVVLVSGLLQGIGLPVSTSIPLVNRAAAAVWVGSPSNGTRRLAG CEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEECC RPSLRVTVVPSQSNVSLFAYLYCMDALGVAKLITHAPYSLRNATSGRAVTLDWPLQAAAT CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEECCCHHHHH EIPAGQRLVLVIDTRDARYTDASEGGGTVTFTSPVAAPSVLNVPLR CCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA