Click here to switch to the map view.

The map label for this gene is ywbI [H]

Identifier: 21241442

GI number: 21241442

Start: 796213

End: 797118

Strand: Direct

Name: ywbI [H]

Synonym: XAC0671

Alternate gene names: 21241442

Gene position: 796213-797118 (Clockwise)

Preceding gene: 21241440

Following gene: 21241444

Centisome position: 15.38

GC content: 69.43

Gene sequence:

>906_bases
ATGCAGGTGGAATTCACCGACTTGCGGATCTTTGTTGCGGTGGCCGACACCGGCAGCATCACTGCCGGCGCCGACCGCGT
GGCGCTGTCGCTGGCGGCTACCAGTGCGCGTATTCGCGCGTTGGAGCTGCAGATCGGCGTGGCCCTGTTCGAGCGTGGTC
GGCGAGGCGTGACGCTCACCGCCGCCGGCCAGGTCCTGCTGCGGCATGCACGGGCATTGGCACGCCAGGAACAGGCCATG
CGCAGCGAGCTTGGCGATTACGGACTCGGTGGACAGGTCACCCTGCGATTGGCTGCGAACACCGCCGCACTCTCCGAATG
GCTACCCGAGTGCGTTGCGGATTTTTTGCTGGCCCATCCGCGGGTGGACCTGACCCTGGCCGAATGGGGCAGCGAGGAGG
CTGCCGATGCCGTGCGCGATGAACGTGCCGACCTTGCCGTGGTGGCCGGGCATGCCGACTTCACCGGCCTGCAACGGCGT
CCGTTCCGACAGGATCGCCTGGTGGTCGCGGTGGCCGCCAGCCATCCGCTTGCCGGCGCAGGCAGCCTGCGTCTGGCCGA
TATCGCGCCGATGCAGTTGCTGGCGTTATCGGCCGACAACGCCTTGCAGCGCCACCTGCGGACGCATCTGGCCCGGGCCG
GCGTACAGCTGCGCATCCGTGCGCGCGTGCCGGGTCTCGAAACGCTGTGCCGCATGCTGGCACGCGGCGTGGGCGTGGCC
ATCGTGCCGCACGCGGCGCTGGCGTGCTCCAGTGTCAGGCAGCAGCTGGCGGCGGTGCCGCTGGAGGAACCCTGGGCGCG
GCGCGAGCTGTCCATCATCTGGCGCGACGCCCCCTCGGTCACCCTGCAGGCCTTGCTGGAATGGCTGCAGGCCAGCGCCA
CGCATGCCGGCATTCATCCGGCTTGA

Upstream 100 bases:

>100_bases
CGTCTTCATTCATGGCGGTCAGGATCGGTGCGGCAGCGGTGTCCGGCAAGCTGTCTTTGTTTGAGGCAGACTTCGGCCAC
GCCGAAGGCTGGAGGTGCAG

Downstream 100 bases:

>100_bases
TGACCGCAGCGCTGCGGGCATCGGGTGGCCGTGTCACAGCCGGCACGCGCCTGGCTGCCGGCCAACGGCTCTTGCACGTC
CGTGTTTTCAGCGTGGCCAC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MQVEFTDLRIFVAVADTGSITAGADRVALSLAATSARIRALELQIGVALFERGRRGVTLTAAGQVLLRHARALARQEQAM
RSELGDYGLGGQVTLRLAANTAALSEWLPECVADFLLAHPRVDLTLAEWGSEEAADAVRDERADLAVVAGHADFTGLQRR
PFRQDRLVVAVAASHPLAGAGSLRLADIAPMQLLALSADNALQRHLRTHLARAGVQLRIRARVPGLETLCRMLARGVGVA
IVPHAALACSSVRQQLAAVPLEEPWARRELSIIWRDAPSVTLQALLEWLQASATHAGIHPA

Sequences:

>Translated_301_residues
MQVEFTDLRIFVAVADTGSITAGADRVALSLAATSARIRALELQIGVALFERGRRGVTLTAAGQVLLRHARALARQEQAM
RSELGDYGLGGQVTLRLAANTAALSEWLPECVADFLLAHPRVDLTLAEWGSEEAADAVRDERADLAVVAGHADFTGLQRR
PFRQDRLVVAVAASHPLAGAGSLRLADIAPMQLLALSADNALQRHLRTHLARAGVQLRIRARVPGLETLCRMLARGVGVA
IVPHAALACSSVRQQLAAVPLEEPWARRELSIIWRDAPSVTLQALLEWLQASATHAGIHPA
>Mature_301_residues
MQVEFTDLRIFVAVADTGSITAGADRVALSLAATSARIRALELQIGVALFERGRRGVTLTAAGQVLLRHARALARQEQAM
RSELGDYGLGGQVTLRLAANTAALSEWLPECVADFLLAHPRVDLTLAEWGSEEAADAVRDERADLAVVAGHADFTGLQRR
PFRQDRLVVAVAASHPLAGAGSLRLADIAPMQLLALSADNALQRHLRTHLARAGVQLRIRARVPGLETLCRMLARGVGVA
IVPHAALACSSVRQQLAAVPLEEPWARRELSIIWRDAPSVTLQALLEWLQASATHAGIHPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=280, Percent_Identity=25.7142857142857, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1790399, Length=283, Percent_Identity=25.0883392226148, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787806, Length=296, Percent_Identity=26.3513513513513, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1788297, Length=249, Percent_Identity=27.710843373494, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI157672245, Length=268, Percent_Identity=26.4925373134328, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787530, Length=249, Percent_Identity=26.1044176706827, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786713, Length=282, Percent_Identity=30.8510638297872, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788748, Length=257, Percent_Identity=28.4046692607004, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788481, Length=181, Percent_Identity=31.4917127071823, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789506, Length=271, Percent_Identity=21.7712177121771, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787879, Length=287, Percent_Identity=26.4808362369338, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787949, Length=302, Percent_Identity=28.8079470198675, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1790262, Length=243, Percent_Identity=24.6913580246914, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786401, Length=171, Percent_Identity=27.4853801169591, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=193, Percent_Identity=25.9067357512953, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1790208, Length=251, Percent_Identity=25.8964143426295, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787128, Length=127, Percent_Identity=31.496062992126, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788887, Length=251, Percent_Identity=26.2948207171315, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32275; Mature: 32275

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVEFTDLRIFVAVADTGSITAGADRVALSLAATSARIRALELQIGVALFERGRRGVTLT
CCEEEEEEEEEEEEECCCCCCCCCHHHEEEHHHHHHHHEEEHHHHHHHHHHCCCCCEEEE
AAGQVLLRHARALARQEQAMRSELGDYGLGGQVTLRLAANTAALSEWLPECVADFLLAHP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCC
RVDLTLAEWGSEEAADAVRDERADLAVVAGHADFTGLQRRPFRQDRLVVAVAASHPLAGA
CCEEEHHHCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCC
GSLRLADIAPMQLLALSADNALQRHLRTHLARAGVQLRIRARVPGLETLCRMLARGVGVA
CCEEEECCCCHHHEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCEE
IVPHAALACSSVRQQLAAVPLEEPWARRELSIIWRDAPSVTLQALLEWLQASATHAGIHP
EHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCC
A
C
>Mature Secondary Structure
MQVEFTDLRIFVAVADTGSITAGADRVALSLAATSARIRALELQIGVALFERGRRGVTLT
CCEEEEEEEEEEEEECCCCCCCCCHHHEEEHHHHHHHHEEEHHHHHHHHHHCCCCCEEEE
AAGQVLLRHARALARQEQAMRSELGDYGLGGQVTLRLAANTAALSEWLPECVADFLLAHP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCC
RVDLTLAEWGSEEAADAVRDERADLAVVAGHADFTGLQRRPFRQDRLVVAVAASHPLAGA
CCEEEHHHCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCC
GSLRLADIAPMQLLALSADNALQRHLRTHLARAGVQLRIRARVPGLETLCRMLARGVGVA
CCEEEECCCCHHHEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCEE
IVPHAALACSSVRQQLAAVPLEEPWARRELSIIWRDAPSVTLQALLEWLQASATHAGIHP
EHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]