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The map label for this gene is mdcY [H]

Identifier: 21241339

GI number: 21241339

Start: 669438

End: 670157

Strand: Direct

Name: mdcY [H]

Synonym: XAC0568

Alternate gene names: 21241339

Gene position: 669438-670157 (Clockwise)

Preceding gene: 21241338

Following gene: 21241344

Centisome position: 12.93

GC content: 66.67

Gene sequence:

>720_bases
ATGACCCTCGCTCCTGATTCGCGCGCCTCCAAAAAGCGCGTGCCGCTGTACGAGGAAGTGGCCGAGCGCCTGCGTCAGAA
GATCTACGAGTACGCGCTGCCGCCGGGCGAGTGGATCGACGAGCCGGCCCTGGCCGAAGAACTCGGCATCAGCCGCACGC
CGCTGCGCGAAAGTCTCAAGCTGCTCGCTGCCGAAGGCCTGGTGCAACTGGATGCCGGCCGCGGTAGCCGGGTCACCCGG
CTGACGCTGGAAGACCTCAACCAGTTATTCCCGGTGATGGCGATGCTGGAAGGCCGCTGCGCGCACGATGCGGTCAAGCG
CATCGATGCGGCCGGCGTGCAGCGCCTGGAAGAGCTGCATGCGGCAATGGAAGCCGCATCGGCAGCCGGCGATGTGGCCG
AGTATTACCGCAACAATTACCTGATCCACGAAACCGTGCAGCAGTACGCCGGCAATCCCTGGTTGATCCGGGTGACGCAC
GATCTGCACCGCATCTTGAAGATGCACCGCGGCCGTCAGTTGCTCACGCCCGGGCGCATGGCGCAATCGCTGGCGGAGCA
TCGCCAACTGATGGACTGCGTGCGACGCGGCGATGCCGAAGGCGCCGAGCGCACCATGCACGGGCACCTGCTGAGCCAGG
GCCAGGCCCTGGCAGCGTATGTCGCGGCCGGCGGCATGTTGAACGTACCGGCGCCGTTGCCGCGGGTCGGTGGGGTGTAG

Upstream 100 bases:

>100_bases
CGTGGTGCCGGGCTGGCTGTGATGCGGTCCGCACGCCACAGCGCAGCGGGGCGCCCACGTAGAATGGGCGCCCCGACCCG
ATGCCGACAGCCTGCCCGCC

Downstream 100 bases:

>100_bases
ACGTTGGCGCTGTCCGGGCGCATCACCACGCGCACCGGGATCGCACTTCCTTCTCCCATCGGGAGAAGGTGCCCGAAGGG
CGGATGAGGGTACGTCGACA

Product: MdcY family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MTLAPDSRASKKRVPLYEEVAERLRQKIYEYALPPGEWIDEPALAEELGISRTPLRESLKLLAAEGLVQLDAGRGSRVTR
LTLEDLNQLFPVMAMLEGRCAHDAVKRIDAAGVQRLEELHAAMEAASAAGDVAEYYRNNYLIHETVQQYAGNPWLIRVTH
DLHRILKMHRGRQLLTPGRMAQSLAEHRQLMDCVRRGDAEGAERTMHGHLLSQGQALAAYVAAGGMLNVPAPLPRVGGV

Sequences:

>Translated_239_residues
MTLAPDSRASKKRVPLYEEVAERLRQKIYEYALPPGEWIDEPALAEELGISRTPLRESLKLLAAEGLVQLDAGRGSRVTR
LTLEDLNQLFPVMAMLEGRCAHDAVKRIDAAGVQRLEELHAAMEAASAAGDVAEYYRNNYLIHETVQQYAGNPWLIRVTH
DLHRILKMHRGRQLLTPGRMAQSLAEHRQLMDCVRRGDAEGAERTMHGHLLSQGQALAAYVAAGGMLNVPAPLPRVGGV
>Mature_238_residues
TLAPDSRASKKRVPLYEEVAERLRQKIYEYALPPGEWIDEPALAEELGISRTPLRESLKLLAAEGLVQLDAGRGSRVTRL
TLEDLNQLFPVMAMLEGRCAHDAVKRIDAAGVQRLEELHAAMEAASAAGDVAEYYRNNYLIHETVQQYAGNPWLIRVTHD
LHRILKMHRGRQLLTPGRMAQSLAEHRQLMDCVRRGDAEGAERTMHGHLLSQGQALAAYVAAGGMLNVPAPLPRVGGV

Specific function: May Be A Regulatory Protein For The Lct Genes. [C]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26469; Mature: 26338

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLAPDSRASKKRVPLYEEVAERLRQKIYEYALPPGEWIDEPALAEELGISRTPLRESLK
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHH
LLAAEGLVQLDAGRGSRVTRLTLEDLNQLFPVMAMLEGRCAHDAVKRIDAAGVQRLEELH
HHHHHCCCEEECCCCCCEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
AAMEAASAAGDVAEYYRNNYLIHETVQQYAGNPWLIRVTHDLHRILKMHRGRQLLTPGRM
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCCCHHHH
AQSLAEHRQLMDCVRRGDAEGAERTMHGHLLSQGQALAAYVAAGGMLNVPAPLPRVGGV
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TLAPDSRASKKRVPLYEEVAERLRQKIYEYALPPGEWIDEPALAEELGISRTPLRESLK
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHH
LLAAEGLVQLDAGRGSRVTRLTLEDLNQLFPVMAMLEGRCAHDAVKRIDAAGVQRLEELH
HHHHHCCCEEECCCCCCEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
AAMEAASAAGDVAEYYRNNYLIHETVQQYAGNPWLIRVTHDLHRILKMHRGRQLLTPGRM
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCCCHHHH
AQSLAEHRQLMDCVRRGDAEGAERTMHGHLLSQGQALAAYVAAGGMLNVPAPLPRVGGV
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]