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The map label for this gene is mdcD

Identifier: 21241332

GI number: 21241332

Start: 663217

End: 663534

Strand: Direct

Name: mdcD

Synonym: XAC0561

Alternate gene names: 21241332

Gene position: 663217-663534 (Clockwise)

Preceding gene: 21241331

Following gene: 21241333

Centisome position: 12.81

GC content: 66.04

Gene sequence:

>318_bases
ATGGAAACCCTGCGATATCGCTTTGACGGACAGCGTGGCGCACGCGCCGGGCTGGAACACGCGCTGGTCGGTGTCGTGGC
CTCCGGCAATCTGGAAGTGCTGGTCGAGCGCGTGCCGCTCGAGGGCGCGATGGAAATCGACATCCTCACCGCCGCACGCG
GCTTTGGCGCGATCTGGCAGGCAGTGCTGGACGATTTCGCCGCGCGTCACCCACTGCGCGACGTACGCATCAGCATCAAC
GATGTCGGCGCCACGCCGGCGGTGGTGAGTTTGCGCCTGGAACAAGCGCTGGATGTGCTGCAGGGAGCCGACGCATGA

Upstream 100 bases:

>100_bases
GCGCGATTTGCTTGCAGCGCGTACGGTCAAGGACCTGGTGCGCTGGTCCGGCGGCTTGTACGACCCGCCGAAACGTTTTC
GCAATTGGTAAGGGCATAGC

Downstream 100 bases:

>100_bases
GCCGCCACTGTCACCCCGTAGGAGCGCACCAGGGCGCGACGGGCATTCCCGGTAAGGCTTCAGTCGCGCCCCGGTGCGCT
CCTACGCAAGCGATCGGGAG

Product: malonate decarboxylase subunit delta

Products: NA

Alternate protein names: Malonate decarboxylase subunit delta

Number of amino acids: Translated: 105; Mature: 105

Protein sequence:

>105_residues
METLRYRFDGQRGARAGLEHALVGVVASGNLEVLVERVPLEGAMEIDILTAARGFGAIWQAVLDDFAARHPLRDVRISIN
DVGATPAVVSLRLEQALDVLQGADA

Sequences:

>Translated_105_residues
METLRYRFDGQRGARAGLEHALVGVVASGNLEVLVERVPLEGAMEIDILTAARGFGAIWQAVLDDFAARHPLRDVRISIN
DVGATPAVVSLRLEQALDVLQGADA
>Mature_105_residues
METLRYRFDGQRGARAGLEHALVGVVASGNLEVLVERVPLEGAMEIDILTAARGFGAIWQAVLDDFAARHPLRDVRISIN
DVGATPAVVSLRLEQALDVLQGADA

Specific function: Subunit of malonate decarboxylase, it is an acyl carrier protein to which acetyl and malonyl thioester residues are bound via a 2'-(5''-phosphoribosyl)-3'-dephospho-CoA prosthetic group and turn over during the catalytic mechanism

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mdcC family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): MDCC_XANAC (Q8PPX2)

Other databases:

- EMBL:   AE008923
- RefSeq:   NP_640914.1
- GeneID:   1154632
- GenomeReviews:   AE008923_GR
- KEGG:   xac:XAC0561
- NMPDR:   fig|190486.1.peg.558
- HOGENOM:   HBG509271
- OMA:   RPDTVSL
- ProtClustDB:   PRK02103
- BioCyc:   XAXO190486:XAC0561-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00710
- InterPro:   IPR009662
- ProDom:   PD015450
- TIGRFAMs:   TIGR03130

Pfam domain/function: PF06857 MdcD

EC number: NA

Molecular weight: Translated: 11263; Mature: 11263

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METLRYRFDGQRGARAGLEHALVGVVASGNLEVLVERVPLEGAMEIDILTAARGFGAIWQ
CCCCCEEECCCCCCHHHHHHHHHEEEECCCCEEEEEECCCCCCEEEEEEHHCCHHHHHHH
AVLDDFAARHPLRDVRISINDVGATPAVVSLRLEQALDVLQGADA
HHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
METLRYRFDGQRGARAGLEHALVGVVASGNLEVLVERVPLEGAMEIDILTAARGFGAIWQ
CCCCCEEECCCCCCHHHHHHHHHEEEECCCCEEEEEECCCCCCEEEEEEHHCCHHHHHHH
AVLDDFAARHPLRDVRISINDVGATPAVVSLRLEQALDVLQGADA
HHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217