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The map label for this gene is rbcR [H]

Identifier: 21241029

GI number: 21241029

Start: 303652

End: 304608

Strand: Reverse

Name: rbcR [H]

Synonym: XAC0255

Alternate gene names: 21241029

Gene position: 304608-303652 (Counterclockwise)

Preceding gene: 21241034

Following gene: 21241028

Centisome position: 5.89

GC content: 64.89

Gene sequence:

>957_bases
ATGGCGCCAACCCCTCGATTCTCCTACAAATCCGATCGGCTCAAGCCGTTGCGCGCGTTCTGCCAGACGGTGCGTCTGGG
CTCTGTCTCACGTGCGGCTGAGGCGCTCTATGTCAGCCAGCCGGCGGTGACCTTGCAGCTGCAAGCGCTGGAGCGTGATC
TGGGCGTGCCGTTATTCGAGCGCTCCGGGCGACGCATGGCGCCCAGCCGCGAGGGCCAGTTGCTGTACGACATGGCGCAG
CCGCTGGTGGAAAGCCTCGATGGGCTGGAAGCGAGCTTTCGCGAGAAGGTGCGCGGGCTCGATGCCGGCGAACTCAATAT
CGCCGCCAACAGCTCCACCATCCTGTACCTGCTGCCGCGCATCGTGGCCAACTTCCGCGCGCGCCATCCAGACGTGCGTC
TGACCCTGCACAACGCCATCAGCGCCGATGGCACCGACCTGCTGCGCGAAGACGCGGTGGATCTGGCGGTCGGCTCGATG
CTGGACGTGCCGGCCGACCTCAACTACGCGCCGGTCTACCGTTTCGAACAATTGCTGATCACCCCGCCCGACCATCCGTT
GGCTGGCAAGGCCGAGGTCTCGCTGCAGGATCTGTCGCCGTATCCATTGATCCTGCCGCCGCGCCGGCAGGTGACCTACC
GCCTGGTCGATCTGATCTTCCAGCAGGCGCGCGTGCCCTACACCGTGGCGCTGGAGGTGGGCGGCTGGGAGGTGATCAAG
CAATACGTGGCAATGGGCATGGGTATTTCCATCGTCACCGCCATCTGCCTCACCGAGGCCGACCGCGACAAGCTGGCCAC
GCGCTCGCTGAAGGACTTTTTCCCGACCCGCAGTTACGGCGTGGTGGTGCGCAAGGGCAAGTATCTGTCGCCGCAAGCAC
GCGCGTTTATCGAGCTGATCCAGCCGGATCTGTTCACCCCGCGTGGCTATGACGAGAGCGGCGATTCGGAGCGTTGA

Upstream 100 bases:

>100_bases
CCGGACCTGCACCGTGCGCCCGATACAACTATTTGACAAAGCAGTTTTATCAATGCTGTAAATAAGTCTGGCTTATATTA
AACCCGCGCAGAGTAGTACC

Downstream 100 bases:

>100_bases
GCCGTTCGATATGGCCCAGCGTTATCGCCTGGCGATGCGAGCACGCGTCACGCCATCCAGCACGCGCATGCGCCGGAAGA
CGCTCGATGAAGCGCGCTAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MAPTPRFSYKSDRLKPLRAFCQTVRLGSVSRAAEALYVSQPAVTLQLQALERDLGVPLFERSGRRMAPSREGQLLYDMAQ
PLVESLDGLEASFREKVRGLDAGELNIAANSSTILYLLPRIVANFRARHPDVRLTLHNAISADGTDLLREDAVDLAVGSM
LDVPADLNYAPVYRFEQLLITPPDHPLAGKAEVSLQDLSPYPLILPPRRQVTYRLVDLIFQQARVPYTVALEVGGWEVIK
QYVAMGMGISIVTAICLTEADRDKLATRSLKDFFPTRSYGVVVRKGKYLSPQARAFIELIQPDLFTPRGYDESGDSER

Sequences:

>Translated_318_residues
MAPTPRFSYKSDRLKPLRAFCQTVRLGSVSRAAEALYVSQPAVTLQLQALERDLGVPLFERSGRRMAPSREGQLLYDMAQ
PLVESLDGLEASFREKVRGLDAGELNIAANSSTILYLLPRIVANFRARHPDVRLTLHNAISADGTDLLREDAVDLAVGSM
LDVPADLNYAPVYRFEQLLITPPDHPLAGKAEVSLQDLSPYPLILPPRRQVTYRLVDLIFQQARVPYTVALEVGGWEVIK
QYVAMGMGISIVTAICLTEADRDKLATRSLKDFFPTRSYGVVVRKGKYLSPQARAFIELIQPDLFTPRGYDESGDSER
>Mature_317_residues
APTPRFSYKSDRLKPLRAFCQTVRLGSVSRAAEALYVSQPAVTLQLQALERDLGVPLFERSGRRMAPSREGQLLYDMAQP
LVESLDGLEASFREKVRGLDAGELNIAANSSTILYLLPRIVANFRARHPDVRLTLHNAISADGTDLLREDAVDLAVGSML
DVPADLNYAPVYRFEQLLITPPDHPLAGKAEVSLQDLSPYPLILPPRRQVTYRLVDLIFQQARVPYTVALEVGGWEVIKQ
YVAMGMGISIVTAICLTEADRDKLATRSLKDFFPTRSYGVVVRKGKYLSPQARAFIELIQPDLFTPRGYDESGDSER

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787530, Length=295, Percent_Identity=27.1186440677966, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=30.1694915254237, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1788296, Length=284, Percent_Identity=27.112676056338, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI157672245, Length=280, Percent_Identity=27.1428571428571, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1789204, Length=240, Percent_Identity=29.1666666666667, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI145693105, Length=293, Percent_Identity=26.6211604095563, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1787601, Length=221, Percent_Identity=27.1493212669683, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1790262, Length=285, Percent_Identity=25.6140350877193, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1790208, Length=293, Percent_Identity=26.6211604095563, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788887, Length=293, Percent_Identity=23.8907849829352, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI87082132, Length=285, Percent_Identity=26.6666666666667, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1786401, Length=302, Percent_Identity=27.1523178807947, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790399, Length=272, Percent_Identity=25, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787879, Length=245, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788748, Length=290, Percent_Identity=26.2068965517241, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081904, Length=200, Percent_Identity=27, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082024, Length=168, Percent_Identity=27.3809523809524, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788297, Length=241, Percent_Identity=25.3112033195021, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI2367136, Length=284, Percent_Identity=22.887323943662, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35419; Mature: 35288

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPTPRFSYKSDRLKPLRAFCQTVRLGSVSRAAEALYVSQPAVTLQLQALERDLGVPLFE
CCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHEECCCCCEEEHHHHHHHHCCCHHH
RSGRRMAPSREGQLLYDMAQPLVESLDGLEASFREKVRGLDAGELNIAANSSTILYLLPR
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEECCCCHHHHHHHH
IVANFRARHPDVRLTLHNAISADGTDLLREDAVDLAVGSMLDVPADLNYAPVYRFEQLLI
HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHEEEE
TPPDHPLAGKAEVSLQDLSPYPLILPPRRQVTYRLVDLIFQQARVPYTVALEVGGWEVIK
CCCCCCCCCCCEEEHCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHH
QYVAMGMGISIVTAICLTEADRDKLATRSLKDFFPTRSYGVVVRKGKYLSPQARAFIELI
HHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH
QPDLFTPRGYDESGDSER
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
APTPRFSYKSDRLKPLRAFCQTVRLGSVSRAAEALYVSQPAVTLQLQALERDLGVPLFE
CCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHEECCCCCEEEHHHHHHHHCCCHHH
RSGRRMAPSREGQLLYDMAQPLVESLDGLEASFREKVRGLDAGELNIAANSSTILYLLPR
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEECCCCHHHHHHHH
IVANFRARHPDVRLTLHNAISADGTDLLREDAVDLAVGSMLDVPADLNYAPVYRFEQLLI
HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHEEEE
TPPDHPLAGKAEVSLQDLSPYPLILPPRRQVTYRLVDLIFQQARVPYTVALEVGGWEVIK
CCCCCCCCCCCEEEHCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHH
QYVAMGMGISIVTAICLTEADRDKLATRSLKDFFPTRSYGVVVRKGKYLSPQARAFIELI
HHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH
QPDLFTPRGYDESGDSER
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]