Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
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Accession | NC_003919 |
Length | 5,175,554 |
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The map label for this gene is yjl094C [H]
Identifier: 21241028
GI number: 21241028
Start: 302045
End: 303304
Strand: Reverse
Name: yjl094C [H]
Synonym: XAC0254
Alternate gene names: 21241028
Gene position: 303304-302045 (Counterclockwise)
Preceding gene: 21241029
Following gene: 21241027
Centisome position: 5.86
GC content: 67.46
Gene sequence:
>1260_bases ATGAATCAAACCACGTTGTTGCTGGTGCAGTTGGCGGTGATCCTGGGCGCTGCGCGCCTGTGCGGTGCGTTGTTGCAACG CATTGGGCAGCCGCCGGTCATCGGCGAAATGGCGGCCGGGCTGTTGCTCGGTCCGATCGCATTCGGTGCCTGGCTGCCCG ACCTGCACACGGCGTTGTTCGCCGCCAAAACCCTGCCGCCGCTGTCCGGCCTGGCCACGATGGGCGTGGTGCTTTTCATG TTCGTGGTCGGCGTGGAATTGCGTGCGCCGGAAGGCACCAAGACGCAAGTGCGTGCCTCGGTCCTGGTGGGCGTGGCCGG CATCGTGTTGCCGCTGCTGCTCGGTCTGGCTGCCGCGCCGTGGCTGTTCCCGCGCTTCGCACCGCAAGGCGTCAGCTTCT GGCCGTTCGCGCTGTTCATTGCCGCGGCGATGTCGGTGACGGCATTTCCGGTGCTGGCACGCATCCTCAAGGACCGCAAC ATGACGCGGACGCCGGCCGGCCGCCTGGCGCTGGGCGCGGCCGTGATCGACGATGCCACGGTATGGATCTTCCTGGCGAT CGTGCTGACCCTGACCGGCAACAACGCGCATGGCGGTGTGGCGTTCACGGCCATCGGTGCGTTGGTCCTGATCGCCGGCG TGTTCGGTGTGCTCAAGCCTGCCTATGCGCGCCTGCTGCGCTCCCGCGCGCATGACGGCCGGTATGCACCGAGCGCGCTG GTATGGGCGTTGATCGGGCTGCTGGCATGCGCCGCGCTGGCGGAGTGGATCGGGCTGCATGCGATCTTTGGCGCCTTCCT GTTCGGCATCTGCCTGCCGCGCGATGACCGCCTGCTGGAGCATCTGGCCGGGCGCATCGAGCCGCTGGCCATCACCTTGC TGATGCCGGTGCTGTTCGCCGTTGCCGGTCAAGCCACCAGCCCTGGCGCGTTCGCCGGCGCCGGCCTGAGCGGACTTGTG CTGGTGATCGGCATGGCGGTGAGCGGCAAGTTGCTCGGCTGCACGCTGGGTGCGCGCCTGAGCGGCCATCGATGGCGCGA CAGTCTCACCGTGGGCTCGCTGATGAACGCACGCGGGCTGATGGAGTTGGTGGTGATCAAGATCGGACTGGATAGCGGCG TGATCGGGCCGGATCTGTTTACGCTGTTGTTCGGCATGACGCTGGTGACCACGGTGATGGCGTCGCCGATGGTGGCCTGG TTCCAGGGCAGGCGGCACGCAGCGGCCGATGCGCTGGCCGCAAGCAACTCGCCTCACTGA
Upstream 100 bases:
>100_bases GCGCATGCGGCGCATCGCTGTGCCGTCGGTCTGGGGGAACTGGCCGATGACCTGCAGGACGCGAGGGCCGAGCCGACTCA ACCACTGGAATGCTGAGGCG
Downstream 100 bases:
>100_bases TGAGGGCGCGATGGTGCTGCGGTGCCGCGTCAGGCCGGATACCGTGCATGCAACTGCGCTGCGGCCGAGCGCATGGCGTT GGATCACCGCGCGCTCGAGG
Product: Na+/H+-exchanging protein
Products: Proton [Cytoplasm]; K (I) [Periplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 419; Mature: 419
Protein sequence:
>419_residues MNQTTLLLVQLAVILGAARLCGALLQRIGQPPVIGEMAAGLLLGPIAFGAWLPDLHTALFAAKTLPPLSGLATMGVVLFM FVVGVELRAPEGTKTQVRASVLVGVAGIVLPLLLGLAAAPWLFPRFAPQGVSFWPFALFIAAAMSVTAFPVLARILKDRN MTRTPAGRLALGAAVIDDATVWIFLAIVLTLTGNNAHGGVAFTAIGALVLIAGVFGVLKPAYARLLRSRAHDGRYAPSAL VWALIGLLACAALAEWIGLHAIFGAFLFGICLPRDDRLLEHLAGRIEPLAITLLMPVLFAVAGQATSPGAFAGAGLSGLV LVIGMAVSGKLLGCTLGARLSGHRWRDSLTVGSLMNARGLMELVVIKIGLDSGVIGPDLFTLLFGMTLVTTVMASPMVAW FQGRRHAAADALAASNSPH
Sequences:
>Translated_419_residues MNQTTLLLVQLAVILGAARLCGALLQRIGQPPVIGEMAAGLLLGPIAFGAWLPDLHTALFAAKTLPPLSGLATMGVVLFM FVVGVELRAPEGTKTQVRASVLVGVAGIVLPLLLGLAAAPWLFPRFAPQGVSFWPFALFIAAAMSVTAFPVLARILKDRN MTRTPAGRLALGAAVIDDATVWIFLAIVLTLTGNNAHGGVAFTAIGALVLIAGVFGVLKPAYARLLRSRAHDGRYAPSAL VWALIGLLACAALAEWIGLHAIFGAFLFGICLPRDDRLLEHLAGRIEPLAITLLMPVLFAVAGQATSPGAFAGAGLSGLV LVIGMAVSGKLLGCTLGARLSGHRWRDSLTVGSLMNARGLMELVVIKIGLDSGVIGPDLFTLLFGMTLVTTVMASPMVAW FQGRRHAAADALAASNSPH >Mature_419_residues MNQTTLLLVQLAVILGAARLCGALLQRIGQPPVIGEMAAGLLLGPIAFGAWLPDLHTALFAAKTLPPLSGLATMGVVLFM FVVGVELRAPEGTKTQVRASVLVGVAGIVLPLLLGLAAAPWLFPRFAPQGVSFWPFALFIAAAMSVTAFPVLARILKDRN MTRTPAGRLALGAAVIDDATVWIFLAIVLTLTGNNAHGGVAFTAIGALVLIAGVFGVLKPAYARLLRSRAHDGRYAPSAL VWALIGLLACAALAEWIGLHAIFGAFLFGICLPRDDRLLEHLAGRIEPLAITLLMPVLFAVAGQATSPGAFAGAGLSGLV LVIGMAVSGKLLGCTLGARLSGHRWRDSLTVGSLMNARGLMELVVIKIGLDSGVIGPDLFTLLFGMTLVTTVMASPMVAW FQGRRHAAADALAASNSPH
Specific function: This is a Na(+)/H(+) antiporter. It can mediate sodium uptake when a transmembrane pH gradient is applied [H]
COG id: COG0475
COG function: function code P; Kef-type K+ transport systems, membrane components
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322367, Length=405, Percent_Identity=33.0864197530864, Blast_Score=194, Evalue=2e-50,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006153 - InterPro: IPR004771 [H]
Pfam domain/function: PF00999 Na_H_Exchanger [H]
EC number: NA
Molecular weight: Translated: 43556; Mature: 43556
Theoretical pI: Translated: 10.79; Mature: 10.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQTTLLLVQLAVILGAARLCGALLQRIGQPPVIGEMAAGLLLGPIAFGAWLPDLHTALF CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AAKTLPPLSGLATMGVVLFMFVVGVELRAPEGTKTQVRASVLVGVAGIVLPLLLGLAAAP HHHCCCCHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH WLFPRFAPQGVSFWPFALFIAAAMSVTAFPVLARILKDRNMTRTPAGRLALGAAVIDDAT HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH VWIFLAIVLTLTGNNAHGGVAFTAIGALVLIAGVFGVLKPAYARLLRSRAHDGRYAPSAL HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH VWALIGLLACAALAEWIGLHAIFGAFLFGICLPRDDRLLEHLAGRIEPLAITLLMPVLFA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHH VAGQATSPGAFAGAGLSGLVLVIGMAVSGKLLGCTLGARLSGHRWRDSLTVGSLMNARGL HHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHEECCCCCCCCHHHHHHHHHHHHHHHHH MELVVIKIGLDSGVIGPDLFTLLFGMTLVTTVMASPMVAWFQGRRHAAADALAASNSPH HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC >Mature Secondary Structure MNQTTLLLVQLAVILGAARLCGALLQRIGQPPVIGEMAAGLLLGPIAFGAWLPDLHTALF CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AAKTLPPLSGLATMGVVLFMFVVGVELRAPEGTKTQVRASVLVGVAGIVLPLLLGLAAAP HHHCCCCHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH WLFPRFAPQGVSFWPFALFIAAAMSVTAFPVLARILKDRNMTRTPAGRLALGAAVIDDAT HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH VWIFLAIVLTLTGNNAHGGVAFTAIGALVLIAGVFGVLKPAYARLLRSRAHDGRYAPSAL HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH VWALIGLLACAALAEWIGLHAIFGAFLFGICLPRDDRLLEHLAGRIEPLAITLLMPVLFA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHH VAGQATSPGAFAGAGLSGLVLVIGMAVSGKLLGCTLGARLSGHRWRDSLTVGSLMNARGL HHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHEECCCCCCCCHHHHHHHHHHHHHHHHH MELVVIKIGLDSGVIGPDLFTLLFGMTLVTTVMASPMVAWFQGRRHAAADALAASNSPH HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; K (I) [Cytoplasm] [C]
Specific reaction: Proton [Periplasm] + K (I) [Cytoplasm] = Proton [Cytoplasm] + K (I) [Periplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1312090; 1325937 [H]