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The map label for this gene is secB [H]

Identifier: 21240995

GI number: 21240995

Start: 268228

End: 268740

Strand: Direct

Name: secB [H]

Synonym: XAC0221

Alternate gene names: 21240995

Gene position: 268228-268740 (Clockwise)

Preceding gene: 21240994

Following gene: 21240996

Centisome position: 5.18

GC content: 63.74

Gene sequence:

>513_bases
ATGTCCGACGAAATCCTCAACGGCGCCGCTGCGCCGGCCGACGCCGCTGCTGGTCCCGCCTTCACCATCGAAAAGATTTA
CGTCAAGGACGTGTCCTTCGAATCTCCGAACGCACCGGCCGTCTTCAATGACGCCAACCAGCCCGAGCTGCAGCTGAACC
TCAACCAGAAGGTGCAGCGCCTCAACGACAATGCCTTCGAAGTGGTGTTGGCCGTGACCCTGACCTGCACCGCCGGTGGC
AAGACGGCCTATGTGGCCGAAGTGCAGCAAGCCGGCGTGTTCGGCCTGGTCGGCCTGGACCCGCAGGCGATCGACGTGCT
GCTCGGCACCCAGTGCCCGAACATCCTGTTCCCGTACGTGCGCACCCTGGTCAGCGACCTGATCCAGGCCGGCGGCTTCC
CGCCGTTCTACCTGCAGCCGATCAATTTCGAAGCCCTGTATGCGGAAACCCTGCGTCAGCGTCAGAACGAAGGGACCTCG
CTGGCCGATTCCGAGCCGGCTGGCAACGCCTAA

Upstream 100 bases:

>100_bases
TGCGGCACCCGGCACGCCCCCATTGCTGGCGTGAGAGACTCGCGCTTTCACGTTCGCATCACTCAACGCTGCATCCACCG
AACCGTTTCTGGAGTTAGGA

Downstream 100 bases:

>100_bases
GCGTTGATTGCGCCGATGAGCGATTTGACCCACAAGATCGCCGTTCTCGGCGCCGGTTCCTGGGGCACGGCCCTGGCCGC
GCTGCTCGCCAGGCATGGTC

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MSDEILNGAAAPADAAAGPAFTIEKIYVKDVSFESPNAPAVFNDANQPELQLNLNQKVQRLNDNAFEVVLAVTLTCTAGG
KTAYVAEVQQAGVFGLVGLDPQAIDVLLGTQCPNILFPYVRTLVSDLIQAGGFPPFYLQPINFEALYAETLRQRQNEGTS
LADSEPAGNA

Sequences:

>Translated_170_residues
MSDEILNGAAAPADAAAGPAFTIEKIYVKDVSFESPNAPAVFNDANQPELQLNLNQKVQRLNDNAFEVVLAVTLTCTAGG
KTAYVAEVQQAGVFGLVGLDPQAIDVLLGTQCPNILFPYVRTLVSDLIQAGGFPPFYLQPINFEALYAETLRQRQNEGTS
LADSEPAGNA
>Mature_169_residues
SDEILNGAAAPADAAAGPAFTIEKIYVKDVSFESPNAPAVFNDANQPELQLNLNQKVQRLNDNAFEVVLAVTLTCTAGGK
TAYVAEVQQAGVFGLVGLDPQAIDVLLGTQCPNILFPYVRTLVSDLIQAGGFPPFYLQPINFEALYAETLRQRQNEGTSL
ADSEPAGNA

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family [H]

Homologues:

Organism=Escherichia coli, GI1790038, Length=139, Percent_Identity=46.0431654676259, Blast_Score=142, Evalue=1e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003708 [H]

Pfam domain/function: PF02556 SecB [H]

EC number: NA

Molecular weight: Translated: 18072; Mature: 17941

Theoretical pI: Translated: 3.90; Mature: 3.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDEILNGAAAPADAAAGPAFTIEKIYVKDVSFESPNAPAVFNDANQPELQLNLNQKVQR
CCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEECCCCCCEEEEEHHHHHHH
LNDNAFEVVLAVTLTCTAGGKTAYVAEVQQAGVFGLVGLDPQAIDVLLGTQCPNILFPYV
HCCCHHEEEEEEEEEEECCCCEEHEEHHHHCCEEEEECCCHHHHHHHHCCCCCHHHHHHH
RTLVSDLIQAGGFPPFYLQPINFEALYAETLRQRQNEGTSLADSEPAGNA
HHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDEILNGAAAPADAAAGPAFTIEKIYVKDVSFESPNAPAVFNDANQPELQLNLNQKVQR
CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEECCCCCCEEEEEHHHHHHH
LNDNAFEVVLAVTLTCTAGGKTAYVAEVQQAGVFGLVGLDPQAIDVLLGTQCPNILFPYV
HCCCHHEEEEEEEEEEECCCCEEHEEHHHHCCEEEEECCCHHHHHHHHCCCCCHHHHHHH
RTLVSDLIQAGGFPPFYLQPINFEALYAETLRQRQNEGTSLADSEPAGNA
HHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA