BacMap

Definition	Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome.
Accession	NC_003919
Length	5,175,554

Click here to switch to the map view.

The map label for this gene is ylmA [H]

Identifier: 21240953

GI number: 21240953

Start: 221216

End: 222061

Strand: Reverse

Name: ylmA [H]

Synonym: XAC0179

Alternate gene names: 21240953

Gene position: 222061-221216 (Counterclockwise)

Preceding gene: 21240958

Following gene: 77748515

Centisome position: 4.29

GC content: 66.67

Gene sequence:

>846_bases
ATGACTGTTGCCACCGAAAATGCTGCCGATTCCACCGCCGTTGCCAACGCCGCCCCGCTGATCGAACTCGACCAGGCCAG
TGTGATGCGCGGCCAGGTACGGGTGCTGCATGCGCTGAGTCTGCGCATCGCCCTGGGGCAGCACACCGCGATCCTGGGCC
CCAACGGCTGCGGCAAATCGTCCTTCATCAAATTGATCACGCGCGAGCTGTACCCGCTGGCGCGCGCCGACGGCCAGGCC
GCAGTGAAGGTGCTGGGACAAACGCGCTGGCAGGTGGATCGCCTGCGCTCGCAATTGGGCATCGTCACCGGCGATCTGAG
CGTCAATCTGGCCGACATGCCCGGACTGGATGTGGAAAGCGCGGTGCTATCCGGATTCTTCGCCAGCTACGTGGTGCCGC
CGCATCGCGAGATCAGCGACGACATGCGTGCGCGTGCGCGCGAAGCGCTGGCGCTGGCACGCGCATTGCCGCTGGTGGAC
CGGCAATTTGCCGAATTGTCGGCCGGCGAAACCCGACGGGTGCTGATTGCGCGTGCGCTGGTCAATCGCCCGCAGGCGCT
ACTGCTGGACGAGCCGTCCACCGGGCTGGATCTGGTGGCGCGCCAGCACCTGCTCGAGACGATGCGGCACCTCGCCCGGC
AAGGCATCACGCTGGTGCTGGTGACCCATCACATCGAAGAAATCGTGCCGGAGATCGAACGGGTGATCCTGCTGCGCGCC
GGCAAGGTGGTGGCAGACGGCACGCGCGAGGCGCTACTCACCGATGCCAGCCTGTCGGCCGTATTCGACGGCCCGGTGCG
GGTGCAACGCGATGGCGAGCGCTGTTGGGCGACGGTGGGCGAGTAA

Upstream 100 bases:

>100_bases
GGCGATCGCGGCAAACTTCACCCTTCGGATGCGTAGGGTTGCACCTACATTTCTAAAGCGGTTCAGACCCCCTTCCCCAC
TTCCGTCTGCTGTCACCCGT

Downstream 100 bases:

>100_bases
CCGCCACCCCACCTGCAGCCCGTGCAGGCCGTGTCCGTGCACGAGCTGCCGACGATGCTCGACATCGCGATGGCGAAGCG
CTCCGGACGGCCGCAACCGC

Product: ABC transporter ATP-binding protein

Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MTVATENAADSTAVANAAPLIELDQASVMRGQVRVLHALSLRIALGQHTAILGPNGCGKSSFIKLITRELYPLARADGQA
AVKVLGQTRWQVDRLRSQLGIVTGDLSVNLADMPGLDVESAVLSGFFASYVVPPHREISDDMRARAREALALARALPLVD
RQFAELSAGETRRVLIARALVNRPQALLLDEPSTGLDLVARQHLLETMRHLARQGITLVLVTHHIEEIVPEIERVILLRA
GKVVADGTREALLTDASLSAVFDGPVRVQRDGERCWATVGE

Sequences:

>Translated_281_residues
MTVATENAADSTAVANAAPLIELDQASVMRGQVRVLHALSLRIALGQHTAILGPNGCGKSSFIKLITRELYPLARADGQA
AVKVLGQTRWQVDRLRSQLGIVTGDLSVNLADMPGLDVESAVLSGFFASYVVPPHREISDDMRARAREALALARALPLVD
RQFAELSAGETRRVLIARALVNRPQALLLDEPSTGLDLVARQHLLETMRHLARQGITLVLVTHHIEEIVPEIERVILLRA
GKVVADGTREALLTDASLSAVFDGPVRVQRDGERCWATVGE
>Mature_280_residues
TVATENAADSTAVANAAPLIELDQASVMRGQVRVLHALSLRIALGQHTAILGPNGCGKSSFIKLITRELYPLARADGQAA
VKVLGQTRWQVDRLRSQLGIVTGDLSVNLADMPGLDVESAVLSGFFASYVVPPHREISDDMRARAREALALARALPLVDR
QFAELSAGETRRVLIARALVNRPQALLLDEPSTGLDLVARQHLLETMRHLARQGITLVLVTHHIEEIVPEIERVILLRAG
KVVADGTREALLTDASLSAVFDGPVRVQRDGERCWATVGE

Specific function: Part Of The Binding-Protein-Dependent Transport System For Spermidine/Putrescine. Probably Responsible For Energy Coupling To The Transport System. [C]

COG id: COG1119

COG function: function code P; ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI4505771, Length=241, Percent_Identity=30.2904564315353, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI9961252, Length=241, Percent_Identity=30.2904564315353, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI9961250, Length=248, Percent_Identity=29.4354838709677, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI42741659, Length=239, Percent_Identity=29.7071129707113, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI255708477, Length=237, Percent_Identity=31.2236286919831, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI148612844, Length=237, Percent_Identity=31.2236286919831, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI27881501, Length=221, Percent_Identity=24.8868778280543, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI30795238, Length=221, Percent_Identity=24.8868778280543, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI21536376, Length=225, Percent_Identity=28.4444444444444, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI9955968, Length=240, Percent_Identity=27.5, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI9955966, Length=240, Percent_Identity=27.5, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI45243524, Length=240, Percent_Identity=27.5, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI42490749, Length=243, Percent_Identity=27.1604938271605, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI31657092, Length=207, Percent_Identity=30.9178743961353, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI21536378, Length=234, Percent_Identity=29.4871794871795, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI150417984, Length=219, Percent_Identity=29.2237442922374, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI171184400, Length=238, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI21729876, Length=222, Percent_Identity=26.5765765765766, Blast_Score=65, Evalue=9e-11,
Organism=Homo sapiens, GI21729873, Length=222, Percent_Identity=26.5765765765766, Blast_Score=65, Evalue=9e-11,
Organism=Homo sapiens, GI15149474, Length=222, Percent_Identity=26.5765765765766, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI1787370, Length=246, Percent_Identity=28.0487804878049, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1787029, Length=238, Percent_Identity=31.5126050420168, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786975, Length=241, Percent_Identity=30.7053941908714, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1790739, Length=251, Percent_Identity=29.8804780876494, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787712, Length=225, Percent_Identity=31.1111111111111, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786872, Length=256, Percent_Identity=28.90625, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788225, Length=229, Percent_Identity=30.5676855895196, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786803, Length=245, Percent_Identity=28.5714285714286, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787089, Length=238, Percent_Identity=29.8319327731092, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87081709, Length=248, Percent_Identity=25.4032258064516, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1786319, Length=235, Percent_Identity=29.3617021276596, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI87081791, Length=253, Percent_Identity=30.4347826086957, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1790544, Length=247, Percent_Identity=29.1497975708502, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI87082268, Length=251, Percent_Identity=28.2868525896414, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788165, Length=247, Percent_Identity=29.5546558704453, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789672, Length=234, Percent_Identity=28.6324786324786, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1786345, Length=235, Percent_Identity=26.3829787234043, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1788761, Length=232, Percent_Identity=31.0344827586207, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI48994943, Length=261, Percent_Identity=27.5862068965517, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1790467, Length=242, Percent_Identity=26.4462809917355, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788450, Length=252, Percent_Identity=29.3650793650794, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789593, Length=253, Percent_Identity=28.0632411067194, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87081782, Length=234, Percent_Identity=26.9230769230769, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786253, Length=246, Percent_Identity=30.4878048780488, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87082267, Length=233, Percent_Identity=24.4635193133047, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787500, Length=230, Percent_Identity=25.2173913043478, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1786398, Length=241, Percent_Identity=25.7261410788382, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789991, Length=237, Percent_Identity=26.5822784810127, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787759, Length=238, Percent_Identity=27.7310924369748, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789873, Length=213, Percent_Identity=29.5774647887324, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787105, Length=225, Percent_Identity=30.6666666666667, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790190, Length=115, Percent_Identity=27.8260869565217, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789864, Length=260, Percent_Identity=22.6923076923077, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787164, Length=245, Percent_Identity=28.9795918367347, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786563, Length=208, Percent_Identity=30.2884615384615, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI48995001, Length=219, Percent_Identity=29.6803652968037, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789032, Length=231, Percent_Identity=26.4069264069264, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787758, Length=229, Percent_Identity=27.0742358078603, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788002, Length=248, Percent_Identity=26.2096774193548, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789586, Length=264, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1790525, Length=138, Percent_Identity=25.3623188405797, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789963, Length=248, Percent_Identity=24.5967741935484, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789962, Length=235, Percent_Identity=25.1063829787234, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI48994883, Length=227, Percent_Identity=24.2290748898678, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1788644, Length=90, Percent_Identity=40, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17558664, Length=237, Percent_Identity=29.1139240506329, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI193202349, Length=236, Percent_Identity=27.1186440677966, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI193211015, Length=229, Percent_Identity=27.0742358078603, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI193211017, Length=229, Percent_Identity=27.0742358078603, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI71996809, Length=229, Percent_Identity=26.6375545851528, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI25146777, Length=238, Percent_Identity=30.2521008403361, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI212646699, Length=246, Percent_Identity=26.0162601626016, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193209708, Length=236, Percent_Identity=27.9661016949153, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17541710, Length=245, Percent_Identity=27.7551020408163, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17565586, Length=224, Percent_Identity=27.6785714285714, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17569143, Length=228, Percent_Identity=25.8771929824561, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115533608, Length=213, Percent_Identity=27.6995305164319, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322640, Length=232, Percent_Identity=28.8793103448276, Blast_Score=70, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6320874, Length=234, Percent_Identity=29.0598290598291, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI281363262, Length=231, Percent_Identity=32.034632034632, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24653245, Length=231, Percent_Identity=32.034632034632, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI85726357, Length=236, Percent_Identity=29.2372881355932, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24659289, Length=235, Percent_Identity=27.2340425531915, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI17136662, Length=232, Percent_Identity=27.1551724137931, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24650855, Length=247, Percent_Identity=26.7206477732794, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24650853, Length=247, Percent_Identity=26.7206477732794, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI281362751, Length=247, Percent_Identity=26.7206477732794, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI161076682, Length=233, Percent_Identity=26.6094420600858, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI161076684, Length=233, Percent_Identity=26.6094420600858, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581617, Length=233, Percent_Identity=26.6094420600858, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581615, Length=233, Percent_Identity=26.6094420600858, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI85725262, Length=250, Percent_Identity=25.6, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28574533, Length=231, Percent_Identity=25.974025974026, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28574744, Length=225, Percent_Identity=25.7777777777778, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 30415; Mature: 30283

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVATENAADSTAVANAAPLIELDQASVMRGQVRVLHALSLRIALGQHTAILGPNGCGKS
CCCCCCCCCCCHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHEECCCEEEECCCCCCHH
SFIKLITRELYPLARADGQAAVKVLGQTRWQVDRLRSQLGIVTGDLSVNLADMPGLDVES
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCEEECCCEEEECCCCCCCHHH
AVLSGFFASYVVPPHREISDDMRARAREALALARALPLVDRQFAELSAGETRRVLIARAL
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
VNRPQALLLDEPSTGLDLVARQHLLETMRHLARQGITLVLVTHHIEEIVPEIERVILLRA
HCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHC
GKVVADGTREALLTDASLSAVFDGPVRVQRDGERCWATVGE
CCEEECCCHHHHHCCCHHHHEECCCEEEEECCCHHHEECCC
>Mature Secondary Structure 
TVATENAADSTAVANAAPLIELDQASVMRGQVRVLHALSLRIALGQHTAILGPNGCGKS
CCCCCCCCCCHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHEECCCEEEECCCCCCHH
SFIKLITRELYPLARADGQAAVKVLGQTRWQVDRLRSQLGIVTGDLSVNLADMPGLDVES
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCEEECCCEEEECCCCCCCHHH
AVLSGFFASYVVPPHREISDDMRARAREALALARALPLVDRQFAELSAGETRRVLIARAL
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
VNRPQALLLDEPSTGLDLVARQHLLETMRHLARQGITLVLVTHHIEEIVPEIERVILLRA
HCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHC
GKVVADGTREALLTDASLSAVFDGPVRVQRDGERCWATVGE
CCEEECCCHHHHHCCCHHHHEECCCEEEEECCCHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]