Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 21226868

GI number: 21226868

Start: 914177

End: 915277

Strand: Reverse

Name: ydcM [C]

Synonym: MM_0766

Alternate gene names: 21226868

Gene position: 915277-914177 (Counterclockwise)

Preceding gene: 21226869

Following gene: 21226867

Centisome position: 22.34

GC content: 38.69

Gene sequence:

>1101_bases
ATGAATGTGGATAGAACGATTAAACTTAAACTCAGTGTTTCTGAGGAAGATAAAGAATACCTCAAAAAAACCATTACTCT
TTTTAACACTGTGTTTAACGAAGTCGCTAAATATGGCTTTGAACACAAAACCCACAGCAAGGTATCTATCCATCACGCTA
CCTATAAAGACATCCGAGAAAAGTATCCAGAACTCCCTTCTTCTCTTGTTCAAGGTGCAAGAGACATCGCGTGTGAGGCT
CTTAAAGGAGTTGAACTTAAACTCCTTCCAGTAGCCAAACCATTCTCTTCCATTAGATATAATCAGAGGGTAATTACCTA
TTACCTGCAATACGGGAGAGTGAGCATTGCTACTATTAATGGAAGAGTTAAAGCGACTTTCAATATTCCTGGATATTATC
AAGAGTATGTTAATTGGGAAGTCAGAAGTTCTACTTTGAAATATGATGCCATTAAAGGTGCTTTTTTTCTGCATGTAATT
TTCAGAACAGAATCTCCTGAACCATCTGGAAATAAAGTTCTCGGAATTGATAGAGGTATCGTGAATATTGCAGTTTGCTC
TAACAATGTTTTCTTTAATGGAAATCAGATTAAAAATGTTAGAGGCAAATATGCACATCTCCGTAAACAATTGCAGTCCA
AAGGCACTAAGTCGGCTAAACGTCTTCTTCGGAAGATCAGTCGAAAAGAAAGACGGTTCGTGACTGATACTAATCACTGC
ATCTCGAAAACCATTGTTAATATGCCCTTTGACATCTTTGCACTCGAAGATCTGACAAGCATTAGAGTTCAGAACCGGAA
GGGTAAAGCCTTCAACCGGAAGCTTAATTCTTGGGCTTTCTATCAGCTTGCTCAGTTCCTTGAGTACAAAGTGGAAACTC
TTGGTAAGAGAGTTATCTATGTTGATCCTCGTTTCTCTTCTCAGAAATGCTCCAAATGTGGAGATATTCGGAAGAGTAAC
CGGAACGGTAGTTCTTACCATTGTAGAGATTGTGGTTTTCAGATACATGCTGATCTTAATGCCGCTTTGAACATTGCTCA
AGCAGGTATATCTTGCCTGAGTAGGGTTTCTGTCAATAACCCAAACGTAGCAACCATTTAA

Upstream 100 bases:

>100_bases
AAGAAGGCAGGAAACCCCTAAGTCTTTAGCTTAGGGAGTAATGCCGTTAACTTCCCGCTTTTACACTTCCTTCAAGTATA
TAATCTATTGGCATTAATAC

Downstream 100 bases:

>100_bases
CGGTTAGTTACAAGCCCCTGAGTCTTTAGCTCAGGGGTAATTGACTTCTCAATTCTACCGCACGAGTTCTGCACTAAAGG
CCTGAGGAGCTTTTATATTT

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MNVDRTIKLKLSVSEEDKEYLKKTITLFNTVFNEVAKYGFEHKTHSKVSIHHATYKDIREKYPELPSSLVQGARDIACEA
LKGVELKLLPVAKPFSSIRYNQRVITYYLQYGRVSIATINGRVKATFNIPGYYQEYVNWEVRSSTLKYDAIKGAFFLHVI
FRTESPEPSGNKVLGIDRGIVNIAVCSNNVFFNGNQIKNVRGKYAHLRKQLQSKGTKSAKRLLRKISRKERRFVTDTNHC
ISKTIVNMPFDIFALEDLTSIRVQNRKGKAFNRKLNSWAFYQLAQFLEYKVETLGKRVIYVDPRFSSQKCSKCGDIRKSN
RNGSSYHCRDCGFQIHADLNAALNIAQAGISCLSRVSVNNPNVATI

Sequences:

>Translated_366_residues
MNVDRTIKLKLSVSEEDKEYLKKTITLFNTVFNEVAKYGFEHKTHSKVSIHHATYKDIREKYPELPSSLVQGARDIACEA
LKGVELKLLPVAKPFSSIRYNQRVITYYLQYGRVSIATINGRVKATFNIPGYYQEYVNWEVRSSTLKYDAIKGAFFLHVI
FRTESPEPSGNKVLGIDRGIVNIAVCSNNVFFNGNQIKNVRGKYAHLRKQLQSKGTKSAKRLLRKISRKERRFVTDTNHC
ISKTIVNMPFDIFALEDLTSIRVQNRKGKAFNRKLNSWAFYQLAQFLEYKVETLGKRVIYVDPRFSSQKCSKCGDIRKSN
RNGSSYHCRDCGFQIHADLNAALNIAQAGISCLSRVSVNNPNVATI
>Mature_366_residues
MNVDRTIKLKLSVSEEDKEYLKKTITLFNTVFNEVAKYGFEHKTHSKVSIHHATYKDIREKYPELPSSLVQGARDIACEA
LKGVELKLLPVAKPFSSIRYNQRVITYYLQYGRVSIATINGRVKATFNIPGYYQEYVNWEVRSSTLKYDAIKGAFFLHVI
FRTESPEPSGNKVLGIDRGIVNIAVCSNNVFFNGNQIKNVRGKYAHLRKQLQSKGTKSAKRLLRKISRKERRFVTDTNHC
ISKTIVNMPFDIFALEDLTSIRVQNRKGKAFNRKLNSWAFYQLAQFLEYKVETLGKRVIYVDPRFSSQKCSKCGDIRKSN
RNGSSYHCRDCGFQIHADLNAALNIAQAGISCLSRVSVNNPNVATI

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=242, Percent_Identity=25.6198347107438, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 41800; Mature: 41800

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVDRTIKLKLSVSEEDKEYLKKTITLFNTVFNEVAKYGFEHKTHSKVSIHHATYKDIRE
CCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHH
KYPELPSSLVQGARDIACEALKGVELKLLPVAKPFSSIRYNQRVITYYLQYGRVSIATIN
HCCCCHHHHHCCHHHHHHHHHCCCEEEEEECCCCHHHHHHCCHHEEEEEECCCEEEEEEC
GRVKATFNIPGYYQEYVNWEVRSSTLKYDAIKGAFFLHVIFRTESPEPSGNKVLGIDRGI
CEEEEEEECCCHHHHHCCEEEECCEEEHHHHCCEEEEEEEEECCCCCCCCCEEEEECCCE
VNIAVCSNNVFFNGNQIKNVRGKYAHLRKQLQSKGTKSAKRLLRKISRKERRFVTDTNHC
EEEEEECCCEEECCCEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHH
ISKTIVNMPFDIFALEDLTSIRVQNRKGKAFNRKLNSWAFYQLAQFLEYKVETLGKRVIY
HHHHHHCCCCEEEEHHHHHHHEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHCCEEEE
VDPRFSSQKCSKCGDIRKSNRNGSSYHCRDCGFQIHADLNAALNIAQAGISCLSRVSVNN
ECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCEEEEECHHHHHHHHHHHHHHHHHHCCCC
PNVATI
CCCCCC
>Mature Secondary Structure
MNVDRTIKLKLSVSEEDKEYLKKTITLFNTVFNEVAKYGFEHKTHSKVSIHHATYKDIRE
CCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHH
KYPELPSSLVQGARDIACEALKGVELKLLPVAKPFSSIRYNQRVITYYLQYGRVSIATIN
HCCCCHHHHHCCHHHHHHHHHCCCEEEEEECCCCHHHHHHCCHHEEEEEECCCEEEEEEC
GRVKATFNIPGYYQEYVNWEVRSSTLKYDAIKGAFFLHVIFRTESPEPSGNKVLGIDRGI
CEEEEEEECCCHHHHHCCEEEECCEEEHHHHCCEEEEEEEEECCCCCCCCCEEEEECCCE
VNIAVCSNNVFFNGNQIKNVRGKYAHLRKQLQSKGTKSAKRLLRKISRKERRFVTDTNHC
EEEEEECCCEEECCCEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHH
ISKTIVNMPFDIFALEDLTSIRVQNRKGKAFNRKLNSWAFYQLAQFLEYKVETLGKRVIY
HHHHHHCCCCEEEEHHHHHHHEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHCCEEEE
VDPRFSSQKCSKCGDIRKSNRNGSSYHCRDCGFQIHADLNAALNIAQAGISCLSRVSVNN
ECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCEEEEECHHHHHHHHHHHHHHHHHHCCCC
PNVATI
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]