Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
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Accession | NC_003901 |
Length | 4,096,345 |
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The map label for this gene is 21226846
Identifier: 21226846
GI number: 21226846
Start: 890396
End: 891985
Strand: Reverse
Name: 21226846
Synonym: MM_0744
Alternate gene names: NA
Gene position: 891985-890396 (Counterclockwise)
Preceding gene: 21226847
Following gene: 21226845
Centisome position: 21.78
GC content: 42.58
Gene sequence:
>1590_bases TTGAAAAATAAAATACATGATCGGTTTTATTCGACAATTTACGGGGAACTACAACCGCAAATTCTTTTTAACAATGTCAC AGAAGGGCTTGTGTATAAAACTATACGGTCTCCATGTTTATCTCCACGCAGTTTACTTCCGGTGACAGACACTATTTTTG ATTCCGGTCCAGGCAGGCGTGCGGGAGATGCCCTGAAAATTTTTGACAGCCTTGGATTCTGTGAAGCAGCGTCTCTTTCC TCTGTTCATTATCACGGACAGCAACGGCAGGCAGGGTCACTTTACATCTGCAGGCTTATACCAATGGTTAAATGTACCTA TCAAATATCAATGGATATAAAAACGGATGATGCCCGCAGTTTTATCGAACTTAACAGCCCGGGTTCAAAACTGGTAATTA AGGAAGTAAATAACAGGGTTTTATTAATAAGTTATTTCGAAAGTTCTTCAGGCGACATCAGGTCCGAGACCATAACTCTG GGGAACTCCTCTGAGAAACTGGACTTCGAAATTGCGTTTGACGGGTGCAGCAAAACAAACACAATATCTACCAGAGATGG CAAATCCATTGTGACCCCCTTTTATAATTTCGAGAGGCAAAGGCTTCCTTATGTGGATTTCTCAAACGGGTATCTGAAAT TCACATCCTTTATCACCGGAAAAGGAAGGTACATGGACATCAGCATCTACAATCTAAACCAGATAGCAGACCGAAAATTA GTAACCTCTGTCGGAGACTCCAGGCTGATTCCTTTCGGAATTGACGGTCCTCATGTAAGGAATACAACAGAGCAGGGAAT ACGTTATCTTAACAGCAAAAATAACAGAGGCACGATCTGGTTTGATATAGATCTCCTTGAGCAGTGCAGCGAGTCAGACA TTGAGTACCTGCGAAGTCTGGTTTTTGATAATTCCTGGGATACCGGGGTACATTATTCTAAAGAATTGAACGCCTTCCCG CCTGAAGAGGCTTATAAGATTATGGACGAGGGCTATTCATATGTTTATGAGAAAATCGGGCAAAAACCTACAGGCTGGTG CTCGATGAGAAACAAGGATAATATTAAGCATGCCATTTATGCCTATGAAAACCTGGGGATGTTCTGGAGAAACGGAGACT CTGGAGTTCATGCGGAAAAAAACGTTGGAAACCTGGATGACAACACATGGGAGTGGTGGGAATCTGCTTCAAAAGCGGGT ATGGCGTACCCTTCTTTTACTCATGAACTTGACCTTGATCCGGCTATAAAATATTCGATAAGCCGCTCGAAATTCCTCAA CTGGGTCGATACTTACAATTCAAATGGTGCCTCAATAGTCTCTTTTTATGAGTACGGTCAGATAAGCCGTAACACCCATG AAGCCCGATTTGATATCCTTCAGCATACTGACAACTCTGTCATTTTCATCGCACACACAAACGGCTGCGACGCCCTGGCA AATGTAAATATAATGGCTGAAAAAGGCACAGGGGTCTACGATAATACCTCAGAAAAATCCCTTGACTACAGGGTAGATCA GGACAAATCGGTTACTTTCAGGGTTGAAAACAAACATACCTACAGCGTATATCTGCATAGTGCTGAATAA
Upstream 100 bases:
>100_bases ATCAAGTCCCAAAAACATTGATCAGGGTAGTATTACCCTGTTTTCACAGGATTTTTCCAAAATTCACAGCGTCCCGGATA ATATTTTTATTGCAAAACTT
Downstream 100 bases:
>100_bases GGCGTAACCTGAATATCAACTAAACTTGGTATATGACTCTCCTTCTTTTATAAACTGAAATCGTATTATTGAGCGGAGGA ATAAAATGCCATTCATGGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 529; Mature: 529
Protein sequence:
>529_residues MKNKIHDRFYSTIYGELQPQILFNNVTEGLVYKTIRSPCLSPRSLLPVTDTIFDSGPGRRAGDALKIFDSLGFCEAASLS SVHYHGQQRQAGSLYICRLIPMVKCTYQISMDIKTDDARSFIELNSPGSKLVIKEVNNRVLLISYFESSSGDIRSETITL GNSSEKLDFEIAFDGCSKTNTISTRDGKSIVTPFYNFERQRLPYVDFSNGYLKFTSFITGKGRYMDISIYNLNQIADRKL VTSVGDSRLIPFGIDGPHVRNTTEQGIRYLNSKNNRGTIWFDIDLLEQCSESDIEYLRSLVFDNSWDTGVHYSKELNAFP PEEAYKIMDEGYSYVYEKIGQKPTGWCSMRNKDNIKHAIYAYENLGMFWRNGDSGVHAEKNVGNLDDNTWEWWESASKAG MAYPSFTHELDLDPAIKYSISRSKFLNWVDTYNSNGASIVSFYEYGQISRNTHEARFDILQHTDNSVIFIAHTNGCDALA NVNIMAEKGTGVYDNTSEKSLDYRVDQDKSVTFRVENKHTYSVYLHSAE
Sequences:
>Translated_529_residues MKNKIHDRFYSTIYGELQPQILFNNVTEGLVYKTIRSPCLSPRSLLPVTDTIFDSGPGRRAGDALKIFDSLGFCEAASLS SVHYHGQQRQAGSLYICRLIPMVKCTYQISMDIKTDDARSFIELNSPGSKLVIKEVNNRVLLISYFESSSGDIRSETITL GNSSEKLDFEIAFDGCSKTNTISTRDGKSIVTPFYNFERQRLPYVDFSNGYLKFTSFITGKGRYMDISIYNLNQIADRKL VTSVGDSRLIPFGIDGPHVRNTTEQGIRYLNSKNNRGTIWFDIDLLEQCSESDIEYLRSLVFDNSWDTGVHYSKELNAFP PEEAYKIMDEGYSYVYEKIGQKPTGWCSMRNKDNIKHAIYAYENLGMFWRNGDSGVHAEKNVGNLDDNTWEWWESASKAG MAYPSFTHELDLDPAIKYSISRSKFLNWVDTYNSNGASIVSFYEYGQISRNTHEARFDILQHTDNSVIFIAHTNGCDALA NVNIMAEKGTGVYDNTSEKSLDYRVDQDKSVTFRVENKHTYSVYLHSAE >Mature_529_residues MKNKIHDRFYSTIYGELQPQILFNNVTEGLVYKTIRSPCLSPRSLLPVTDTIFDSGPGRRAGDALKIFDSLGFCEAASLS SVHYHGQQRQAGSLYICRLIPMVKCTYQISMDIKTDDARSFIELNSPGSKLVIKEVNNRVLLISYFESSSGDIRSETITL GNSSEKLDFEIAFDGCSKTNTISTRDGKSIVTPFYNFERQRLPYVDFSNGYLKFTSFITGKGRYMDISIYNLNQIADRKL VTSVGDSRLIPFGIDGPHVRNTTEQGIRYLNSKNNRGTIWFDIDLLEQCSESDIEYLRSLVFDNSWDTGVHYSKELNAFP PEEAYKIMDEGYSYVYEKIGQKPTGWCSMRNKDNIKHAIYAYENLGMFWRNGDSGVHAEKNVGNLDDNTWEWWESASKAG MAYPSFTHELDLDPAIKYSISRSKFLNWVDTYNSNGASIVSFYEYGQISRNTHEARFDILQHTDNSVIFIAHTNGCDALA NVNIMAEKGTGVYDNTSEKSLDYRVDQDKSVTFRVENKHTYSVYLHSAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60208; Mature: 60208
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNKIHDRFYSTIYGELQPQILFNNVTEGLVYKTIRSPCLSPRSLLPVTDTIFDSGPGRR CCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCC AGDALKIFDSLGFCEAASLSSVHYHGQQRQAGSLYICRLIPMVKCTYQISMDIKTDDARS CCCHHHHHHHCCCCCCCCCCCEEECCCCCCCCCEEEEEHHHHHEEEEEEEEEEECCCCCC FIELNSPGSKLVIKEVNNRVLLISYFESSSGDIRSETITLGNSSEKLDFEIAFDGCSKTN EEEECCCCCEEEEEECCCCEEEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCC TISTRDGKSIVTPFYNFERQRLPYVDFSNGYLKFTSFITGKGRYMDISIYNLNQIADRKL EEECCCCCEEECCCCCCCCCCCCEEECCCCEEEEEEEEECCCEEEEEEEEECHHHHHHHH VTSVGDSRLIPFGIDGPHVRNTTEQGIRYLNSKNNRGTIWFDIDLLEQCSESDIEYLRSL HHHCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEEEHHHHHHCCHHHHHHHHHH VFDNSWDTGVHYSKELNAFPPEEAYKIMDEGYSYVYEKIGQKPTGWCSMRNKDNIKHAIY HCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEE AYENLGMFWRNGDSGVHAEKNVGNLDDNTWEWWESASKAGMAYPSFTHELDLDPAIKYSI EEECCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHEEEC SRSKFLNWVDTYNSNGASIVSFYEYGQISRNTHEARFDILQHTDNSVIFIAHTNGCDALA CHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCC NVNIMAEKGTGVYDNTSEKSLDYRVDQDKSVTFRVENKHTYSVYLHSAE CCEEEEECCCCCCCCCCCCCCCEEECCCCEEEEEEECCEEEEEEEEECC >Mature Secondary Structure MKNKIHDRFYSTIYGELQPQILFNNVTEGLVYKTIRSPCLSPRSLLPVTDTIFDSGPGRR CCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCC AGDALKIFDSLGFCEAASLSSVHYHGQQRQAGSLYICRLIPMVKCTYQISMDIKTDDARS CCCHHHHHHHCCCCCCCCCCCEEECCCCCCCCCEEEEEHHHHHEEEEEEEEEEECCCCCC FIELNSPGSKLVIKEVNNRVLLISYFESSSGDIRSETITLGNSSEKLDFEIAFDGCSKTN EEEECCCCCEEEEEECCCCEEEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCC TISTRDGKSIVTPFYNFERQRLPYVDFSNGYLKFTSFITGKGRYMDISIYNLNQIADRKL EEECCCCCEEECCCCCCCCCCCCEEECCCCEEEEEEEEECCCEEEEEEEEECHHHHHHHH VTSVGDSRLIPFGIDGPHVRNTTEQGIRYLNSKNNRGTIWFDIDLLEQCSESDIEYLRSL HHHCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEEEHHHHHHCCHHHHHHHHHH VFDNSWDTGVHYSKELNAFPPEEAYKIMDEGYSYVYEKIGQKPTGWCSMRNKDNIKHAIY HCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEE AYENLGMFWRNGDSGVHAEKNVGNLDDNTWEWWESASKAGMAYPSFTHELDLDPAIKYSI EEECCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHEEEC SRSKFLNWVDTYNSNGASIVSFYEYGQISRNTHEARFDILQHTDNSVIFIAHTNGCDALA CHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCC NVNIMAEKGTGVYDNTSEKSLDYRVDQDKSVTFRVENKHTYSVYLHSAE CCEEEEECCCCCCCCCCCCCCCEEECCCCEEEEEEECCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA