| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is cdhC1 [H]
Identifier: 21226788
GI number: 21226788
Start: 822897
End: 824306
Strand: Direct
Name: cdhC1 [H]
Synonym: MM_0686
Alternate gene names: 21226788
Gene position: 822897-824306 (Clockwise)
Preceding gene: 21226787
Following gene: 21226789
Centisome position: 20.09
GC content: 48.3
Gene sequence:
>1410_bases ATGGCAGAATTCCCATTTGAGATTTCCCCAATGTTTGAAGGAGAAAGAGTAAGGAAAGAAGGAATGTTCGTTGAACTCGG TGGTCCAAAATCACTTGGTCTCGAACTTGTCAGGGCTGCAGACATGGATGCGATTGAAGACGACAAAGTCACAATCATCG GTCCTGACCTCAAGGACATGGAAGAGGGAAAGACCTACCCCTGGGCAATGATCTTCAACATAGGCGGAGAACTTGTCGAG CCTGACCTTGAGTCTGTCGTAGAAAGGCGTGTCCACGACTTCATCAACTACTGCCAGGGCATTATGCACCTGAACCAGAG GTATGATGTCTGGATGAGAGTTTCCAAGGACACAGCTGCAAAGATGGACTCATTTGAGCCATTCGGAAAGGCAGTTATGA TGCTCTTCAAGACAGAACTTCCATTTATCGAGAAGATGCAGGTAACTTTCTACACAGACAAGGATGAAGTCGAAAAGCAG ATGGAAACAGCAAAGGAGATCTTCAAGGCAAGAGATGCAAGGACAAAGGACCTCCACGATGAAGATGTTGAAGTCTTCTA TGGATGTACACTCTGCCAGTCCTTTGCTCCGACCAATGTCTGCGTTGTGTCTCCGGACAGGATCTCTCTCTGCGGTGCTA TCAACTGGTTCGACGGCCGTGCAGCAGCAAAAGTAGACCCTGAAGGACCACAGTTTGAAATTGCAAAGGGTGACCTGCTC GATGCAGTAACAGGGGAATACACAGGAGTCAACGAAATCGCAAAGAAGCTGTCAAGCGGCGAATTTGACAAGATAAAACT CCACTCCTTCTTTGACTCACCACACACATCATGCGGCTGCTTTGAAGTTGTAGGGTTCTACATCCCTGAAGTCGATGGTA TAGGATGGGTAGACAGAGAATACCAGGGAATGGCTCCGAACGGTATCGGATTCTCAACCATGGCAGGCCAGACCGGTGGT GGAAAGCAGATCGTAGGGTTCCTCGGTATTGGTGTAAACTACTTCTACTCACCAAAGTTCATCCAGGCTGATGGCGGATG GAACAGAGTTGTATGGCTGCCTTCCAAACTCAAAGAGAAGATCGACGAAGCAATACCCGCTGACCTCAAAGACAAGATCG CAACAGAAAACGATGCAAGCGACATCGAGTCCCTGAAAGCCTTCCTCCAGGAGAAGAACCACCCTGTAGTTGCTACCTGG GCAGCAGCTGAAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAGGAAGTAGCTGTTGCAGCAGCTCCGATGATGATGCCAGC AGCAGGATTCCAGATGCCGGCAATGCCAATGATGTCAGGCGGTTCAAGCGGTGGAATAAAGCTGACCTTCAAAAACGCAA AGATCACCATTGACAGGATGATCATCAGCGAAAAGAAGGAAAAGAAATAA
Upstream 100 bases:
>100_bases ACGCAACAATGTCTTTCGGAAACCTTAGCAAGGCAGAACACTACGCTGCCCTGGATGAGCTAGTTGATTTTTTATAATTT GATTTAGGAGGCGAAATATA
Downstream 100 bases:
>100_bases CTGAACAACAACGGGCAATTGCCTAAAACCGAAAAACAATCAAAAGGGGTATTCTGTGACCAAAGTAATTGCAATAACGG GAAAAGGCGGAACTGGAAAA
Product: acetyl-CoA decarbonylase/synthase complex subunit beta
Products: CO2; AH2
Alternate protein names: ACDS complex subunit beta 1; ACDS complex acyltransferase 1 [H]
Number of amino acids: Translated: 469; Mature: 468
Protein sequence:
>469_residues MAEFPFEISPMFEGERVRKEGMFVELGGPKSLGLELVRAADMDAIEDDKVTIIGPDLKDMEEGKTYPWAMIFNIGGELVE PDLESVVERRVHDFINYCQGIMHLNQRYDVWMRVSKDTAAKMDSFEPFGKAVMMLFKTELPFIEKMQVTFYTDKDEVEKQ METAKEIFKARDARTKDLHDEDVEVFYGCTLCQSFAPTNVCVVSPDRISLCGAINWFDGRAAAKVDPEGPQFEIAKGDLL DAVTGEYTGVNEIAKKLSSGEFDKIKLHSFFDSPHTSCGCFEVVGFYIPEVDGIGWVDREYQGMAPNGIGFSTMAGQTGG GKQIVGFLGIGVNYFYSPKFIQADGGWNRVVWLPSKLKEKIDEAIPADLKDKIATENDASDIESLKAFLQEKNHPVVATW AAAEEEEEEEEEEEEVAVAAAPMMMPAAGFQMPAMPMMSGGSSGGIKLTFKNAKITIDRMIISEKKEKK
Sequences:
>Translated_469_residues MAEFPFEISPMFEGERVRKEGMFVELGGPKSLGLELVRAADMDAIEDDKVTIIGPDLKDMEEGKTYPWAMIFNIGGELVE PDLESVVERRVHDFINYCQGIMHLNQRYDVWMRVSKDTAAKMDSFEPFGKAVMMLFKTELPFIEKMQVTFYTDKDEVEKQ METAKEIFKARDARTKDLHDEDVEVFYGCTLCQSFAPTNVCVVSPDRISLCGAINWFDGRAAAKVDPEGPQFEIAKGDLL DAVTGEYTGVNEIAKKLSSGEFDKIKLHSFFDSPHTSCGCFEVVGFYIPEVDGIGWVDREYQGMAPNGIGFSTMAGQTGG GKQIVGFLGIGVNYFYSPKFIQADGGWNRVVWLPSKLKEKIDEAIPADLKDKIATENDASDIESLKAFLQEKNHPVVATW AAAEEEEEEEEEEEEVAVAAAPMMMPAAGFQMPAMPMMSGGSSGGIKLTFKNAKITIDRMIISEKKEKK >Mature_468_residues AEFPFEISPMFEGERVRKEGMFVELGGPKSLGLELVRAADMDAIEDDKVTIIGPDLKDMEEGKTYPWAMIFNIGGELVEP DLESVVERRVHDFINYCQGIMHLNQRYDVWMRVSKDTAAKMDSFEPFGKAVMMLFKTELPFIEKMQVTFYTDKDEVEKQM ETAKEIFKARDARTKDLHDEDVEVFYGCTLCQSFAPTNVCVVSPDRISLCGAINWFDGRAAAKVDPEGPQFEIAKGDLLD AVTGEYTGVNEIAKKLSSGEFDKIKLHSFFDSPHTSCGCFEVVGFYIPEVDGIGWVDREYQGMAPNGIGFSTMAGQTGGG KQIVGFLGIGVNYFYSPKFIQADGGWNRVVWLPSKLKEKIDEAIPADLKDKIATENDASDIESLKAFLQEKNHPVVATWA AAEEEEEEEEEEEEVAVAAAPMMMPAAGFQMPAMPMMSGGSSGGIKLTFKNAKITIDRMIISEKKEKK
Specific function: Part of a complex that catalyzes the reversible cleavage of acetyl-CoA, allowing growth on acetate as sole source of carbon and energy [H]
COG id: COG1614
COG function: function code C; CO dehydrogenase/acetyl-CoA synthase beta subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CdhC family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004461 - InterPro: IPR011254 [H]
Pfam domain/function: PF03598 CdhC [H]
EC number: 1.2.99.2
Molecular weight: Translated: 52233; Mature: 52102
Theoretical pI: Translated: 4.37; Mature: 4.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEFPFEISPMFEGERVRKEGMFVELGGPKSLGLELVRAADMDAIEDDKVTIIGPDLKDM CCCCCCCCCCCCCCCHHHHCCEEEEECCCHHHHHHHHHHCCCCCCCCCCEEEECCCHHHH EEGKTYPWAMIFNIGGELVEPDLESVVERRVHDFINYCQGIMHLNQRYDVWMRVSKDTAA HCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH KMDSFEPFGKAVMMLFKTELPFIEKMQVTFYTDKDEVEKQMETAKEIFKARDARTKDLHD HHCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCC EDVEVFYGCTLCQSFAPTNVCVVSPDRISLCGAINWFDGRAAAKVDPEGPQFEIAKGDLL CCCCEEEHHHHHHCCCCCCEEEECCCCEEEEEEEECCCCCEEEEECCCCCCEEEECCCHH DAVTGEYTGVNEIAKKLSSGEFDKIKLHSFFDSPHTSCGCFEVVGFYIPEVDGIGWVDRE HHHCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC YQGMAPNGIGFSTMAGQTGGGKQIVGFLGIGVNYFYSPKFIQADGGWNRVVWLPSKLKEK CCCCCCCCCCCHHCCCCCCCCCEEEEEEECCCEEEECCEEEECCCCCCEEEECHHHHHHH IDEAIPADLKDKIATENDASDIESLKAFLQEKNHPVVATWAAAEEEEEEEEEEEEVAVAA HHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH APMMMPAAGFQMPAMPMMSGGSSGGIKLTFKNAKITIDRMIISEKKEKK CCHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEHHHHHHHHCCC >Mature Secondary Structure AEFPFEISPMFEGERVRKEGMFVELGGPKSLGLELVRAADMDAIEDDKVTIIGPDLKDM CCCCCCCCCCCCCCHHHHCCEEEEECCCHHHHHHHHHHCCCCCCCCCCEEEECCCHHHH EEGKTYPWAMIFNIGGELVEPDLESVVERRVHDFINYCQGIMHLNQRYDVWMRVSKDTAA HCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH KMDSFEPFGKAVMMLFKTELPFIEKMQVTFYTDKDEVEKQMETAKEIFKARDARTKDLHD HHCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCC EDVEVFYGCTLCQSFAPTNVCVVSPDRISLCGAINWFDGRAAAKVDPEGPQFEIAKGDLL CCCCEEEHHHHHHCCCCCCEEEECCCCEEEEEEEECCCCCEEEEECCCCCCEEEECCCHH DAVTGEYTGVNEIAKKLSSGEFDKIKLHSFFDSPHTSCGCFEVVGFYIPEVDGIGWVDRE HHHCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC YQGMAPNGIGFSTMAGQTGGGKQIVGFLGIGVNYFYSPKFIQADGGWNRVVWLPSKLKEK CCCCCCCCCCCHHCCCCCCCCCEEEEEEECCCEEEECCEEEECCCCCCEEEECHHHHHHH IDEAIPADLKDKIATENDASDIESLKAFLQEKNHPVVATWAAAEEEEEEEEEEEEVAVAA HHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH APMMMPAAGFQMPAMPMMSGGSSGGIKLTFKNAKITIDRMIISEKKEKK CCHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: CO; H2O; A
Specific reaction: CO + H2O + A = CO2 + AH2
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8955306 [H]