| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is yyaL [H]
Identifier: 21226721
GI number: 21226721
Start: 751213
End: 753315
Strand: Direct
Name: yyaL [H]
Synonym: MM_0619
Alternate gene names: 21226721
Gene position: 751213-753315 (Clockwise)
Preceding gene: 21226720
Following gene: 21226722
Centisome position: 18.34
GC content: 45.27
Gene sequence:
>2103_bases GTGATTATACTGGAAAAAGAACAGAAAGAACCTAACCGCCTGATTAAAGAAAAAAGTCCTTATCTTCTACAGCATGCCTA TAATCCTGTAGACTGGTACCCATGGGGAGAAGAGGCTTTCGAAAAAGCCAGAAAAGAAAACAAGCCTGTTTTTCTCTCAA TCGGATATTCGACCTGCCACTGGTGCCATATGATGGCACATGAGTCTTTTGAGGACGAAGAAGTTGCAGGGCTTATGAAT GAAGCTTTTGTCTCCATAAAAGTGGACAGGGAAGAACGGCCAGATATCGACAACATTTACATGACTGTCTGCCAGATTAT CCTTGGCAGAGGAGGATGGCCTCTCAATATCATCATGACTCCGGGCAAGAAGCCTTTTTTTGCTGGCACATATATCCCGA AAAATACACGCTTTAACCAGATAGGAATGCTGGAACTGGTCCCCAGGATAAAAGAAATCTGGGAACAGCAGCATGAAGAA GTGCTTGATTCAGCTGAAAAAATTACATCCACCATCCAGGAAATGATTAAGGAGTCTTCAGGAGAAGGGCTCGGGGAAGA GGTAATAGAAGAGGTTTATGAAGAACTTCTCAGCTCGTTTGATACGGAATACGGAGGTTTTTCAGGAGCTCCGAAGTTCC CCACTCCCCACAAGATTTCCTTTTTGCTCCGTTACTGGAGGCGCAGCAGAAACCCTGAAGCCCTTCATATGGCAGAATAC ACACTGGACAAAATGCGCAGGGGAGGGATCTATGACCACCTGGGATCAGGTTTCCATAGATATTCTACGGACAGCATGTG GCTTCTGCCTCACTTTGAAAAAATGTTATACGACCAGGCTCTTACTGCAATTGCATATACTGAAGCCTATCAGGTTACCG GAAAAGACCTGTATAAAGAAACAGCAGAAGGAATCCTCGATTACGTCCTGAGAGACCTTACATCCCCGGAAGGAGGTTTT TACTGCGGTGAGGATGCGGATGTAGAAAGGGAGGAAGGAAAATACTACTTATGGACTCTGGAAGAGATCAGGAGCATCCT TGATCCTGAGGATTCCGAATTGATAATAAAAATGTTCAATTTGAGAGAGGAAGGAAATTTTGAAGAGGAAATAAGAGGTA GAGAGACCGGAACAAACCTTTTCTATATGGCTCGGTCTCCAGGGTCACTTGCAGCTAAGATGAAGATTCCTGTAGAAGAA GTCGAAAAGAAGGTAAAAGCTGCCAGGGAAAAACTCCTTAAAGCCAGATATGAGCGCAAAAGGCCTTCACTGGATGATAA GATCCTTACCGACTGGAACGGGCTTATGATTGCTGCCTTTGCAAAAGGTTATCAGGTTTTTGGAGAGCAGAGGTATCTGA AAGCTGCAGAGAAAGCTGCGGATTTTATTCTTATGGCTCTTTACAGTCCAGGGGACGGGCTGCTTCACCGCTACAGGGAC GGGGTTGCAGGAATCTCAGGAACTTCCGATGACTATGCATTTTTGATTCATGGGCTCCTGGAACTTTACGAGGCGGGATT CAAAATGCGCTACCTTAAAGCTGCAGTTTCTCTTAACAGCGAGCTTCTCGAATGCTTCTGGGACCCTGTTAACGGCGGAC TCTACTTTACAGCAAATGACAGCGAGGCTCTTATATTCAGAAAAAAGGAGTTTATGGATTCGGCAATACCTACAGGTAAC TCATTCGAAATGCTGAATCTTCTGCGCCTCTCCAGAATAATTGCAGACCCCGGACTTGAGGAGACGGCTGACAAACTCGA ACGCGCGTTTTCAAAACAGATTATGAAAGCGCCTTCTGGATATACTCAGTTCCTGTCAGCCTTTGACTTCAGGCTTGGGC CTTCATACGAAGTGATAATTTCGGGAAAAGCCGAAGCTTCGGACACGGAACAGATGCTGAAAGAGCTCTGGAGTTATTTT GTGCCCAACAAGGTGCTTATTTTCAGACCTGAAAGAGAAAAACCTGAAATTACTGAGCTGGCAAAGTATACAGAAGAGCA GGTCCCAATTGAAGGAAAGGCAACTGCATACGTCTGCCAGAACTACGAATGCCAGCTTCCCACCACAGAGATCAGAGAGA TGCTAAGGATGCTGAATGTTTGA
Upstream 100 bases:
>100_bases GTCCTTTTATGAATATTTATGAAGAGTTCAGTCCTTATGCCTGCGAGGAGTACACTTCAGGGCTTGAAAGGCAGGATCTG GATCTTGATGAAGAGCAGGA
Downstream 100 bases:
>100_bases GCCCGGTCTCAGGCTGGTTGCGGATTCCAGGATGGCAGATTCAAATTTATAAAACCAGATTATGACTTTAACGTGAAAGA ACTGGAGGATATGAAAATGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 700; Mature: 700
Protein sequence:
>700_residues MIILEKEQKEPNRLIKEKSPYLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMN EAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIKEIWEQQHEE VLDSAEKITSTIQEMIKESSGEGLGEEVIEEVYEELLSSFDTEYGGFSGAPKFPTPHKISFLLRYWRRSRNPEALHMAEY TLDKMRRGGIYDHLGSGFHRYSTDSMWLLPHFEKMLYDQALTAIAYTEAYQVTGKDLYKETAEGILDYVLRDLTSPEGGF YCGEDADVEREEGKYYLWTLEEIRSILDPEDSELIIKMFNLREEGNFEEEIRGRETGTNLFYMARSPGSLAAKMKIPVEE VEKKVKAAREKLLKARYERKRPSLDDKILTDWNGLMIAAFAKGYQVFGEQRYLKAAEKAADFILMALYSPGDGLLHRYRD GVAGISGTSDDYAFLIHGLLELYEAGFKMRYLKAAVSLNSELLECFWDPVNGGLYFTANDSEALIFRKKEFMDSAIPTGN SFEMLNLLRLSRIIADPGLEETADKLERAFSKQIMKAPSGYTQFLSAFDFRLGPSYEVIISGKAEASDTEQMLKELWSYF VPNKVLIFRPEREKPEITELAKYTEEQVPIEGKATAYVCQNYECQLPTTEIREMLRMLNV
Sequences:
>Translated_700_residues MIILEKEQKEPNRLIKEKSPYLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMN EAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIKEIWEQQHEE VLDSAEKITSTIQEMIKESSGEGLGEEVIEEVYEELLSSFDTEYGGFSGAPKFPTPHKISFLLRYWRRSRNPEALHMAEY TLDKMRRGGIYDHLGSGFHRYSTDSMWLLPHFEKMLYDQALTAIAYTEAYQVTGKDLYKETAEGILDYVLRDLTSPEGGF YCGEDADVEREEGKYYLWTLEEIRSILDPEDSELIIKMFNLREEGNFEEEIRGRETGTNLFYMARSPGSLAAKMKIPVEE VEKKVKAAREKLLKARYERKRPSLDDKILTDWNGLMIAAFAKGYQVFGEQRYLKAAEKAADFILMALYSPGDGLLHRYRD GVAGISGTSDDYAFLIHGLLELYEAGFKMRYLKAAVSLNSELLECFWDPVNGGLYFTANDSEALIFRKKEFMDSAIPTGN SFEMLNLLRLSRIIADPGLEETADKLERAFSKQIMKAPSGYTQFLSAFDFRLGPSYEVIISGKAEASDTEQMLKELWSYF VPNKVLIFRPEREKPEITELAKYTEEQVPIEGKATAYVCQNYECQLPTTEIREMLRMLNV >Mature_700_residues MIILEKEQKEPNRLIKEKSPYLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMN EAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIKEIWEQQHEE VLDSAEKITSTIQEMIKESSGEGLGEEVIEEVYEELLSSFDTEYGGFSGAPKFPTPHKISFLLRYWRRSRNPEALHMAEY TLDKMRRGGIYDHLGSGFHRYSTDSMWLLPHFEKMLYDQALTAIAYTEAYQVTGKDLYKETAEGILDYVLRDLTSPEGGF YCGEDADVEREEGKYYLWTLEEIRSILDPEDSELIIKMFNLREEGNFEEEIRGRETGTNLFYMARSPGSLAAKMKIPVEE VEKKVKAAREKLLKARYERKRPSLDDKILTDWNGLMIAAFAKGYQVFGEQRYLKAAEKAADFILMALYSPGDGLLHRYRD GVAGISGTSDDYAFLIHGLLELYEAGFKMRYLKAAVSLNSELLECFWDPVNGGLYFTANDSEALIFRKKEFMDSAIPTGN SFEMLNLLRLSRIIADPGLEETADKLERAFSKQIMKAPSGYTQFLSAFDFRLGPSYEVIISGKAEASDTEQMLKELWSYF VPNKVLIFRPEREKPEITELAKYTEEQVPIEGKATAYVCQNYECQLPTTEIREMLRMLNV
Specific function: Unknown
COG id: COG1331
COG function: function code O; Highly conserved protein containing a thioredoxin domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To C.elegans B0495.5 [H]
Homologues:
Organism=Homo sapiens, GI31542723, Length=730, Percent_Identity=40.1369863013699, Blast_Score=555, Evalue=1e-158, Organism=Caenorhabditis elegans, GI25147430, Length=719, Percent_Identity=35.4659248956885, Blast_Score=425, Evalue=1e-119, Organism=Drosophila melanogaster, GI20129985, Length=731, Percent_Identity=36.7989056087551, Blast_Score=463, Evalue=1e-130,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008928 - InterPro: IPR012341 - InterPro: IPR010819 - InterPro: IPR004879 - InterPro: IPR005198 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF03190 DUF255; PF07221 GlcNAc_2-epim; PF03663 Glyco_hydro_76 [H]
EC number: NA
Molecular weight: Translated: 80643; Mature: 80643
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIILEKEQKEPNRLIKEKSPYLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYSTCH CEEECCCCCCHHHHHHCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCHHHH WCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLNIIMT HHHHHHHCCCCHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEC PGKKPFFAGTYIPKNTRFNQIGMLELVPRIKEIWEQQHEEVLDSAEKITSTIQEMIKESS CCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GEGLGEEVIEEVYEELLSSFDTEYGGFSGAPKFPTPHKISFLLRYWRRSRNPEALHMAEY CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHH TLDKMRRGGIYDHLGSGFHRYSTDSMWLLPHFEKMLYDQALTAIAYTEAYQVTGKDLYKE HHHHHHCCCCHHHHCCCCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH TAEGILDYVLRDLTSPEGGFYCGEDADVEREEGKYYLWTLEEIRSILDPEDSELIIKMFN HHHHHHHHHHHHHCCCCCCEECCCCCCCHHHCCCEEEEEHHHHHHHHCCCCHHHHHHHHH LREEGNFEEEIRGRETGTNLFYMARSPGSLAAKMKIPVEEVEKKVKAAREKLLKARYERK CCCCCCCHHHHCCCCCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHC RPSLDDKILTDWNGLMIAAFAKGYQVFGEQRYLKAAEKAADFILMALYSPGDGLLHRYRD CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHC GVAGISGTSDDYAFLIHGLLELYEAGFKMRYLKAAVSLNSELLECFWDPVNGGLYFTAND CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC SEALIFRKKEFMDSAIPTGNSFEMLNLLRLSRIIADPGLEETADKLERAFSKQIMKAPSG CCEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCH YTQFLSAFDFRLGPSYEVIISGKAEASDTEQMLKELWSYFVPNKVLIFRPEREKPEITEL HHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHH AKYTEEQVPIEGKATAYVCQNYECQLPTTEIREMLRMLNV HHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure MIILEKEQKEPNRLIKEKSPYLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYSTCH CEEECCCCCCHHHHHHCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCHHHH WCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLNIIMT HHHHHHHCCCCHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEC PGKKPFFAGTYIPKNTRFNQIGMLELVPRIKEIWEQQHEEVLDSAEKITSTIQEMIKESS CCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GEGLGEEVIEEVYEELLSSFDTEYGGFSGAPKFPTPHKISFLLRYWRRSRNPEALHMAEY CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHH TLDKMRRGGIYDHLGSGFHRYSTDSMWLLPHFEKMLYDQALTAIAYTEAYQVTGKDLYKE HHHHHHCCCCHHHHCCCCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH TAEGILDYVLRDLTSPEGGFYCGEDADVEREEGKYYLWTLEEIRSILDPEDSELIIKMFN HHHHHHHHHHHHHCCCCCCEECCCCCCCHHHCCCEEEEEHHHHHHHHCCCCHHHHHHHHH LREEGNFEEEIRGRETGTNLFYMARSPGSLAAKMKIPVEEVEKKVKAAREKLLKARYERK CCCCCCCHHHHCCCCCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHC RPSLDDKILTDWNGLMIAAFAKGYQVFGEQRYLKAAEKAADFILMALYSPGDGLLHRYRD CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHC GVAGISGTSDDYAFLIHGLLELYEAGFKMRYLKAAVSLNSELLECFWDPVNGGLYFTAND CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC SEALIFRKKEFMDSAIPTGNSFEMLNLLRLSRIIADPGLEETADKLERAFSKQIMKAPSG CCEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCH YTQFLSAFDFRLGPSYEVIISGKAEASDTEQMLKELWSYFVPNKVLIFRPEREKPEITEL HHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHH AKYTEEQVPIEGKATAYVCQNYECQLPTTEIREMLRMLNV HHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377 [H]