Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
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Accession | NC_003901 |
Length | 4,096,345 |
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The map label for this gene is 21226713
Identifier: 21226713
GI number: 21226713
Start: 741777
End: 742907
Strand: Reverse
Name: 21226713
Synonym: MM_0611
Alternate gene names: NA
Gene position: 742907-741777 (Counterclockwise)
Preceding gene: 21226714
Following gene: 21226712
Centisome position: 18.14
GC content: 48.36
Gene sequence:
>1131_bases ATGAACACAACAGTCTCAATTGTACGCTGTTCCGACTACTCAAAAGTGAAAAGTGCAATCAAAGAGGCACTTTCCCTGAT AGGAGGACTTGAGAGTATTATTGCTCCTGGCAATCGTGTACTGCTTAAGCCCAACGTACTTGCTATCCGGCCTCCGGAGG ATGCTGTTACCACTCACCCTGCAGTAGTATCTGCAATGTGTGAGCTTATCAGGGAAGTGGGCGGCATCCCGATAATAGGA GACGGGTCAGGGGTTGTGAGACCCGATGTCAGTACTGCGGAGGCTTTTCGTGCATCCGGAATTGAGGCTGCTGCGTCCTC CTGCGGGGCAGAGCTCATTAATTTCGAGACATCGGGGTATACTGAGGTCTCTGTCCCCGCAGCCAGGCAGTTTCCACGCC TTTATATCGCAAAAGCAGTCCTTGAAGCTGATGTTGTTATTTCGCTTCCTAAACTTAAAACACATGAACTGACCCTCTAT ACCGGGGCTCTCAAAAATTTTTTCGGGGCTGTGCCGCATAAGATCCGAAAGCAGGCACATGCTCTGGAAGACCGTGACCG TTTTGGAGAGGCGATAGTTGACATATATTCAATCGTCAAGCCCCACCTTGCAGTCATGGACGGGGTGGTCGGGATGGAAG GGAATGGCCCTGCCAACGGGACGCCCATAAATTCAGGGTTGATTCTTGCAAGTTATGACTGCGTATCCCTTGATATGGTT GCTTCCGAACTCATAGGGATCGACCCGTTAAAAGTGCCCACAAATAAAGCTGCGCTTTCGAGAGGGTTCGGGACCGAAAA GCCGGAGCTTGCAGGAGTGCCTCTGGAGGAAGCAGGTCTAAAATTTAAGATGGCAGAAGGCGGAGTAACTGCGATGGTTC CTCCTTTTCTTATGAGGACTCTTAGAAAATATTTGACTGTAAAGCCTTTCATAAATACATCAAAATGTGCACTTTGCAAA GCCTGCGTTTTGAATTGTTCGGCACATGCAATTGAGGAAATGAACAAAACACTTAAAATTAACCCTGAAAAATGCATCCA GTGTTATTGCTGCCGCGAACTCTGCCCTAATGATGCGGTAGAAATCAGGAAGTCCTTCCTGATGAAGGTGGTGACCAGAA GGAGAACATGA
Upstream 100 bases:
>100_bases GTTCGGCTCCTCCTGTTTATTATCTGGATAGGTAAGCCGCAAAAACAGGTTCTACATCAAAATTTCATATGGATCTGATC CACAATTCAGATGGATAAGC
Downstream 100 bases:
>100_bases AGAAAAGCTGAGCCTGAGTAAAAGCAGGATATGAGGAAATAATCCAATAATGGGAATGCAGAAAATAAGATTCTCTCATA TTTATTGTTATTTATTTCAA
Product: Iron-sulfur cluster-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 376; Mature: 376
Protein sequence:
>376_residues MNTTVSIVRCSDYSKVKSAIKEALSLIGGLESIIAPGNRVLLKPNVLAIRPPEDAVTTHPAVVSAMCELIREVGGIPIIG DGSGVVRPDVSTAEAFRASGIEAAASSCGAELINFETSGYTEVSVPAARQFPRLYIAKAVLEADVVISLPKLKTHELTLY TGALKNFFGAVPHKIRKQAHALEDRDRFGEAIVDIYSIVKPHLAVMDGVVGMEGNGPANGTPINSGLILASYDCVSLDMV ASELIGIDPLKVPTNKAALSRGFGTEKPELAGVPLEEAGLKFKMAEGGVTAMVPPFLMRTLRKYLTVKPFINTSKCALCK ACVLNCSAHAIEEMNKTLKINPEKCIQCYCCRELCPNDAVEIRKSFLMKVVTRRRT
Sequences:
>Translated_376_residues MNTTVSIVRCSDYSKVKSAIKEALSLIGGLESIIAPGNRVLLKPNVLAIRPPEDAVTTHPAVVSAMCELIREVGGIPIIG DGSGVVRPDVSTAEAFRASGIEAAASSCGAELINFETSGYTEVSVPAARQFPRLYIAKAVLEADVVISLPKLKTHELTLY TGALKNFFGAVPHKIRKQAHALEDRDRFGEAIVDIYSIVKPHLAVMDGVVGMEGNGPANGTPINSGLILASYDCVSLDMV ASELIGIDPLKVPTNKAALSRGFGTEKPELAGVPLEEAGLKFKMAEGGVTAMVPPFLMRTLRKYLTVKPFINTSKCALCK ACVLNCSAHAIEEMNKTLKINPEKCIQCYCCRELCPNDAVEIRKSFLMKVVTRRRT >Mature_376_residues MNTTVSIVRCSDYSKVKSAIKEALSLIGGLESIIAPGNRVLLKPNVLAIRPPEDAVTTHPAVVSAMCELIREVGGIPIIG DGSGVVRPDVSTAEAFRASGIEAAASSCGAELINFETSGYTEVSVPAARQFPRLYIAKAVLEADVVISLPKLKTHELTLY TGALKNFFGAVPHKIRKQAHALEDRDRFGEAIVDIYSIVKPHLAVMDGVVGMEGNGPANGTPINSGLILASYDCVSLDMV ASELIGIDPLKVPTNKAALSRGFGTEKPELAGVPLEEAGLKFKMAEGGVTAMVPPFLMRTLRKYLTVKPFINTSKCALCK ACVLNCSAHAIEEMNKTLKINPEKCIQCYCCRELCPNDAVEIRKSFLMKVVTRRRT
Specific function: Unknown
COG id: COG2006
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007160 [H]
Pfam domain/function: PF04015 DUF362 [H]
EC number: NA
Molecular weight: Translated: 40357; Mature: 40357
Theoretical pI: Translated: 8.24; Mature: 8.24
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 3.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTTVSIVRCSDYSKVKSAIKEALSLIGGLESIIAPGNRVLLKPNVLAIRPPEDAVTTHP CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCCCH AVVSAMCELIREVGGIPIIGDGSGVVRPDVSTAEAFRASGIEAAASSCGAELINFETSGY HHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHCCHHHHHHHCCHHHEEECCCCC TEVSVPAARQFPRLYIAKAVLEADVVISLPKLKTHELTLYTGALKNFFGAVPHKIRKQAH EEEECCHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEEHHHHHHHHHHCCHHHHHHHH ALEDRDRFGEAIVDIYSIVKPHLAVMDGVVGMEGNGPANGTPINSGLILASYDCVSLDMV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHH ASELIGIDPLKVPTNKAALSRGFGTEKPELAGVPLEEAGLKFKMAEGGVTAMVPPFLMRT HHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHCCCEEEECCCCCCCCCCHHHHHH LRKYLTVKPFINTSKCALCKACVLNCSAHAIEEMNKTLKINPEKCIQCYCCRELCPNDAV HHHHHEECCCCCCHHHHHHHHHHHCCHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCHH EIRKSFLMKVVTRRRT HHHHHHHHHHHHHCCC >Mature Secondary Structure MNTTVSIVRCSDYSKVKSAIKEALSLIGGLESIIAPGNRVLLKPNVLAIRPPEDAVTTHP CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCCCH AVVSAMCELIREVGGIPIIGDGSGVVRPDVSTAEAFRASGIEAAASSCGAELINFETSGY HHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHCCHHHHHHHCCHHHEEECCCCC TEVSVPAARQFPRLYIAKAVLEADVVISLPKLKTHELTLYTGALKNFFGAVPHKIRKQAH EEEECCHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEEHHHHHHHHHHCCHHHHHHHH ALEDRDRFGEAIVDIYSIVKPHLAVMDGVVGMEGNGPANGTPINSGLILASYDCVSLDMV HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHH ASELIGIDPLKVPTNKAALSRGFGTEKPELAGVPLEEAGLKFKMAEGGVTAMVPPFLMRT HHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHCCCEEEECCCCCCCCCCHHHHHH LRKYLTVKPFINTSKCALCKACVLNCSAHAIEEMNKTLKINPEKCIQCYCCRELCPNDAV HHHHHEECCCCCCHHHHHHHHHHHCCHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCHH EIRKSFLMKVVTRRRT HHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]