Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
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Accession | NC_003901 |
Length | 4,096,345 |
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The map label for this gene is 21226691
Identifier: 21226691
GI number: 21226691
Start: 719622
End: 720071
Strand: Reverse
Name: 21226691
Synonym: MM_0589
Alternate gene names: NA
Gene position: 720071-719622 (Counterclockwise)
Preceding gene: 21226692
Following gene: 21226690
Centisome position: 17.58
GC content: 45.78
Gene sequence:
>450_bases ATGACAGAAAGCGATACCAAAATAACACTCATCGGATCACGGCTGGCAAGGGAAGGTCTGGAATTCATATTCAAAGGTGA AATGCCTGAATGCAAGAAATGCCGTTTGAAGAACACCTGCCTTAACCTTGAACCCGGTCGCAGGTATAAAGTTGTTAGAA TTAAAAGCAATGATATACACGAATGTTTCCTGCACGACAGCGGGGTTCTTGCGGTGGATGTCAGCAGGGCTCCCATCACA ACAAGTGTGGAGTCCAGAAAAGCAGTTCAAGGGGCAAAAATTATGTATGAGCCCGCCAAATGTGGCAAGAGAGAGTGTGC TGAGTATGAGACATGCCACCCTGAAGGGCTTATAAAAGGGGACAAATGCAAAATTGTAGAGGTCCTCGAGAGCCTTGATT CAAAATGCGAAGCCGGCATTTCCTTGAAAAAGGTAAAGCTTGCATGGTGA
Upstream 100 bases:
>100_bases ATGCCAGGATTCAGTACCGGACTCAAAATTTTTGGGATAACTCAGGTATATCCTGAAAACTCAGAAAAGGCCCGAAAAAA ATTTAAATGGAAGAACTATT
Downstream 100 bases:
>100_bases ACATAAACAAACACCTTTTAGTAATAGTAAGACTGATTATTAATAAAAAAGGTTTATAAGCGGTGTTAAAAGTGCCTGAA CATGAAATGAACCAGGTCCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 149; Mature: 148
Protein sequence:
>149_residues MTESDTKITLIGSRLAREGLEFIFKGEMPECKKCRLKNTCLNLEPGRRYKVVRIKSNDIHECFLHDSGVLAVDVSRAPIT TSVESRKAVQGAKIMYEPAKCGKRECAEYETCHPEGLIKGDKCKIVEVLESLDSKCEAGISLKKVKLAW
Sequences:
>Translated_149_residues MTESDTKITLIGSRLAREGLEFIFKGEMPECKKCRLKNTCLNLEPGRRYKVVRIKSNDIHECFLHDSGVLAVDVSRAPIT TSVESRKAVQGAKIMYEPAKCGKRECAEYETCHPEGLIKGDKCKIVEVLESLDSKCEAGISLKKVKLAW >Mature_148_residues TESDTKITLIGSRLAREGLEFIFKGEMPECKKCRLKNTCLNLEPGRRYKVVRIKSNDIHECFLHDSGVLAVDVSRAPITT SVESRKAVQGAKIMYEPAKCGKRECAEYETCHPEGLIKGDKCKIVEVLESLDSKCEAGISLKKVKLAW
Specific function: Unknown
COG id: COG1860
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0179 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y589_METMA (Q8PZA5)
Other databases:
- EMBL: AE008384 - RefSeq: NP_632613.1 - GeneID: 1478931 - GenomeReviews: AE008384_GR - KEGG: mma:MM_0589 - NMPDR: fig|192952.1.peg.589 - HOGENOM: HBG540929 - OMA: RSANHPC - ProtClustDB: CLSK811994 - BioCyc: MMAZ192952:MM0589-MONOMER - HAMAP: MF_00498 - InterPro: IPR005369 - PIRSF: PIRSF006595 - ProDom: PD016182
Pfam domain/function: PF03684 UPF0179
EC number: NA
Molecular weight: Translated: 16677; Mature: 16545
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 8.1 %Cys+Met (Translated Protein) 6.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 7.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTESDTKITLIGSRLAREGLEFIFKGEMPECKKCRLKNTCLNLEPGRRYKVVRIKSNDIH CCCCCCEEEEEHHHHHHHHHHEEECCCCCHHHHHHHCCCEECCCCCCEEEEEEECCCCCE ECFLHDSGVLAVDVSRAPITTSVESRKAVQGAKIMYEPAKCGKRECAEYETCHPEGLIKG EEEECCCCEEEEECCCCCCCCCCHHHHHHCCCEEEECCHHCCHHHHCCCCCCCCCCCCCC DKCKIVEVLESLDSKCEAGISLKKVKLAW CCHHHHHHHHHHHHHHHCCCEEEEEEECC >Mature Secondary Structure TESDTKITLIGSRLAREGLEFIFKGEMPECKKCRLKNTCLNLEPGRRYKVVRIKSNDIH CCCCCEEEEEHHHHHHHHHHEEECCCCCHHHHHHHCCCEECCCCCCEEEEEEECCCCCE ECFLHDSGVLAVDVSRAPITTSVESRKAVQGAKIMYEPAKCGKRECAEYETCHPEGLIKG EEEECCCCEEEEECCCCCCCCCCHHHHHHCCCEEEECCHHCCHHHHCCCCCCCCCCCCCC DKCKIVEVLESLDSKCEAGISLKKVKLAW CCHHHHHHHHHHHHHHHCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12125824