Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
---|---|
Accession | NC_003901 |
Length | 4,096,345 |
Click here to switch to the map view.
The map label for this gene is 21226629
Identifier: 21226629
GI number: 21226629
Start: 654671
End: 655501
Strand: Reverse
Name: 21226629
Synonym: MM_0527
Alternate gene names: NA
Gene position: 655501-654671 (Counterclockwise)
Preceding gene: 21226630
Following gene: 21226628
Centisome position: 16.0
GC content: 41.52
Gene sequence:
>831_bases GTGGCCCATAAAAAGGCTTTAACATTTATATTTCTCATTTTTTTTATATCCGTAACTTCCGGTTGTATAAACACTGGCAG CCTTAATAAGGGCCTCGTTACTGAATATTTAAATACGCAGCTTCCTGAAGATCCTGTCCGGGAAGAAAATTCCGAAACTC AGGAGAATAAGGTTGCTGAAAAAAATGAAAGTGATGAAAGTTTTACCCTCCCTGAGATTCCTGAAGTCCCGACATATATT GAAGAAGATCCAGCTTACTCTTATTCTGCAGAACGCAGGAGGATGTCTCTGAGTTTCCAGAGAGCCATTAACTCAGATGA AGAAAGGATAAAGGAAGAAATTTTCAATATCACAGGAAAGTCTTCGGGATATAATATGGAAGATGCATGTGCTGTGTATA ACCATGTAAACAGGCAATGGAAGTACAGGTATGACAAAAATGCCGAGTTTTTCTTCAGGGCTTCACAGACTATAGACAGC GGATATGTAGGAGACTGCGACGACTATTCCATTGTTATCTCTGCCCTTTTGAAGAATATGGGGTTTAACACAAGGGTGGT TACCACATATAACGGGTCATACGGGCATGCTTTTCCCGAAATCTATATCGGGGATGACCTTGATACTGTTTACAGAATAA CGGACTATATAGCAGAAAGGTACCCTTTTGCTGAAAGCGTCTGGTATTGCGAAAGAGAACTGGACGACGGGAAGAAACAG TACTGGCTCAACTTCGACTGGAGCGGGTCAAATGGATATATGCACCCGGGAGGCGTGTATTTTGATGGGAAGAGTGTCAT ATATTACCCGAATGGCCTTGTAGAGTATTAA
Upstream 100 bases:
>100_bases TTGAATCTAATATTCGGCCCCCGAATTTGAAACCATTTTTGTTCTTTTAGAGAAGTTTATTTACTTCTCTTACCCATAAA TTATTTCCGGAGCTGATTTT
Downstream 100 bases:
>100_bases CGTTTACAGGGAGGCTGTACTCCCTTTTTATGCCCGGCCCCTGTCAATACCGGCTGGTTCTGGAGTTCAGATCTATTTTA TGTGCTCTTGCGTGAAGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 276; Mature: 275
Protein sequence:
>276_residues MAHKKALTFIFLIFFISVTSGCINTGSLNKGLVTEYLNTQLPEDPVREENSETQENKVAEKNESDESFTLPEIPEVPTYI EEDPAYSYSAERRRMSLSFQRAINSDEERIKEEIFNITGKSSGYNMEDACAVYNHVNRQWKYRYDKNAEFFFRASQTIDS GYVGDCDDYSIVISALLKNMGFNTRVVTTYNGSYGHAFPEIYIGDDLDTVYRITDYIAERYPFAESVWYCERELDDGKKQ YWLNFDWSGSNGYMHPGGVYFDGKSVIYYPNGLVEY
Sequences:
>Translated_276_residues MAHKKALTFIFLIFFISVTSGCINTGSLNKGLVTEYLNTQLPEDPVREENSETQENKVAEKNESDESFTLPEIPEVPTYI EEDPAYSYSAERRRMSLSFQRAINSDEERIKEEIFNITGKSSGYNMEDACAVYNHVNRQWKYRYDKNAEFFFRASQTIDS GYVGDCDDYSIVISALLKNMGFNTRVVTTYNGSYGHAFPEIYIGDDLDTVYRITDYIAERYPFAESVWYCERELDDGKKQ YWLNFDWSGSNGYMHPGGVYFDGKSVIYYPNGLVEY >Mature_275_residues AHKKALTFIFLIFFISVTSGCINTGSLNKGLVTEYLNTQLPEDPVREENSETQENKVAEKNESDESFTLPEIPEVPTYIE EDPAYSYSAERRRMSLSFQRAINSDEERIKEEIFNITGKSSGYNMEDACAVYNHVNRQWKYRYDKNAEFFFRASQTIDSG YVGDCDDYSIVISALLKNMGFNTRVVTTYNGSYGHAFPEIYIGDDLDTVYRITDYIAERYPFAESVWYCERELDDGKKQY WLNFDWSGSNGYMHPGGVYFDGKSVIYYPNGLVEY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31922; Mature: 31790
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHKKALTFIFLIFFISVTSGCINTGSLNKGLVTEYLNTQLPEDPVREENSETQENKVAE CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH KNESDESFTLPEIPEVPTYIEEDPAYSYSAERRRMSLSFQRAINSDEERIKEEIFNITGK CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC SSGYNMEDACAVYNHVNRQWKYRYDKNAEFFFRASQTIDSGYVGDCDDYSIVISALLKNM CCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHC GFNTRVVTTYNGSYGHAFPEIYIGDDLDTVYRITDYIAERYPFAESVWYCERELDDGKKQ CCCEEEEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEE YWLNFDWSGSNGYMHPGGVYFDGKSVIYYPNGLVEY EEEEEEECCCCCCCCCCCEEECCCEEEECCCCCCCC >Mature Secondary Structure AHKKALTFIFLIFFISVTSGCINTGSLNKGLVTEYLNTQLPEDPVREENSETQENKVAE CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH KNESDESFTLPEIPEVPTYIEEDPAYSYSAERRRMSLSFQRAINSDEERIKEEIFNITGK CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC SSGYNMEDACAVYNHVNRQWKYRYDKNAEFFFRASQTIDSGYVGDCDDYSIVISALLKNM CCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHC GFNTRVVTTYNGSYGHAFPEIYIGDDLDTVYRITDYIAERYPFAESVWYCERELDDGKKQ CCCEEEEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEE YWLNFDWSGSNGYMHPGGVYFDGKSVIYYPNGLVEY EEEEEEECCCCCCCCCCCEEECCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA