| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226601
Identifier: 21226601
GI number: 21226601
Start: 621816
End: 622169
Strand: Direct
Name: 21226601
Synonym: MM_0499
Alternate gene names: NA
Gene position: 621816-622169 (Clockwise)
Preceding gene: 21226600
Following gene: 21226602
Centisome position: 15.18
GC content: 38.7
Gene sequence:
>354_bases ATGGATGCATTCGTCAAAGATAAAATGAATCAAAGTATGAATGATAGAAAACAATATCATTCCCGATTTTTAGAAAATTG CAGTACTTATAACTCATTTCTGGAGTTAGAAAAGAAAGCATTTGAAGCTGGCAGCCTTTCACGGAAACATAAGGAACTCA TGGCCCTGTCTATTTCTATTGTTACCAAATGTGAGCCCTGTATAGAATGGCATGTCCAACAGGCCTGTTTAACAGGTGCA TCAGATAAAGAGATATATGAGACTATAGATGTGGCCCTCGAAATGGGAGGGGGCCCTGCTGCTTATTCTCGATTTGCATT GAATGCACTGGATTTTTACAAAAAACAGGCATGA
Upstream 100 bases:
>100_bases GTTTTTAAGCCTGAGAAGAAATAATCAAGTAAATGTTAGATTCTGAGAAGAAATAATCAAGTAAATGTTTGATTAATACT GTAGATCAGGATGTGATCGC
Downstream 100 bases:
>100_bases AATTCTTGGAATAACAGGCACAAAAAATGAAAGTATCTGGAAGTACTTTCATGCCAGGAAAAAAATAGAAAAACTGTAAC TTCCTTTTTTAATTACTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: Alkylhydroperoxidase Like Protein AhpD Family; Alkylhydroperoxidase Like Protein; Alkylhydroperoxidase AhpD Core; Decarboxylase
Number of amino acids: Translated: 117; Mature: 117
Protein sequence:
>117_residues MDAFVKDKMNQSMNDRKQYHSRFLENCSTYNSFLELEKKAFEAGSLSRKHKELMALSISIVTKCEPCIEWHVQQACLTGA SDKEIYETIDVALEMGGGPAAYSRFALNALDFYKKQA
Sequences:
>Translated_117_residues MDAFVKDKMNQSMNDRKQYHSRFLENCSTYNSFLELEKKAFEAGSLSRKHKELMALSISIVTKCEPCIEWHVQQACLTGA SDKEIYETIDVALEMGGGPAAYSRFALNALDFYKKQA >Mature_117_residues MDAFVKDKMNQSMNDRKQYHSRFLENCSTYNSFLELEKKAFEAGSLSRKHKELMALSISIVTKCEPCIEWHVQQACLTGA SDKEIYETIDVALEMGGGPAAYSRFALNALDFYKKQA
Specific function: Unknown
COG id: COG0599
COG function: function code S; Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13312; Mature: 13312
Theoretical pI: Translated: 6.76; Mature: 6.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 7.7 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 7.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDAFVKDKMNQSMNDRKQYHSRFLENCSTYNSFLELEKKAFEAGSLSRKHKELMALSISI CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH VTKCEPCIEWHVQQACLTGASDKEIYETIDVALEMGGGPAAYSRFALNALDFYKKQA HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MDAFVKDKMNQSMNDRKQYHSRFLENCSTYNSFLELEKKAFEAGSLSRKHKELMALSISI CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH VTKCEPCIEWHVQQACLTGASDKEIYETIDVALEMGGGPAAYSRFALNALDFYKKQA HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA