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The map label for this gene is cpcE1 [H]

Identifier: 21226592

GI number: 21226592

Start: 611803

End: 613161

Strand: Reverse

Name: cpcE1 [H]

Synonym: MM_0490

Alternate gene names: 21226592

Gene position: 613161-611803 (Counterclockwise)

Preceding gene: 21226593

Following gene: 21226587

Centisome position: 14.97

GC content: 50.11

Gene sequence:

>1359_bases
ATGATAAAGCTGTGTGAACTTCTCGGCAGCAGGTCTGCAAAACTTTTTCTTCTCCTGCTCCTGTTCTCCGGAATCTGTGC
TGGTTGTCTTGGCCAGGAACCTATCGAGGCCAGGGTGGACAAACTGGTACGGAGCCTCGGGAATGAAGACCGGAATGTAA
GTTATGCTTCAGCTTATGCACTTATCGATATAGGGGAGCCTTCGGTCAATTCTCTTATAAAAACTTTAGAAGATGATAAC
CCGCAGGTACGCAGCCTTGCCGCCTATTCCCTTGGAAGAATAGGAGAACCGAGAGCATCAAAACCTCTTATTGAGGCTCT
TGAGGACCCTGAACCTGAAGTCCGTATGAATTCGGCTGAGGCTCTTGGAGAGCTGAAAGCTCCGGAAGCCGCGGACCTGC
TTATTGAGCTCCTTGATGACGATAATGATGAAGTGCGCAGCAAAGCCGTATTTGCTCTGGGAGCCATAGGGGACCCGAAA
GCTGCTCTTGCTCTCATAGAGCTGTTTGATGACAGGGAACTCGGGAGGTCTGCAGCTGGTGCTGTGGGAAACCTGGGGGA
CGAAGAGGCAGTTGAAAAACTTATTGAGCTGCTTGACAGCCGGAACCCGGATGTCCGTATCAACAGTATTCGTGCCCTTG
GGCAGATCCAGAACCCTGCTGCTGTTCCCTACCTGGTTGAAATGCTGGACGATAAGGTCCCGGAGGTTCGAGAGGAAGCT
GCCAGTGCTCTGGGTTACTTTAAAGGACCTAAAGAAATTGCCCGGACAGAACAGCCTCTTATCGATGCGCTTGGAGACGA
CGAGTTCGAGGTGCAGAAAGCTGCTGCCTACTCCCTCGGAGATATTGGAAGTAAAGAAGCAATACCCTTTATTGTGGCAT
TCCTTCAAGCTGAAAATCCGGCTCTCCACAGTGTTGCTGTCCATGCCTTGGGGAGATATAATGATCCTGATGCCACAGCC
GCCCTGATCGATGCCCTTGATGATGAGAGCCGGCATGTAAGATTGGTAATTGTTCATTTTCTTTCCGAGACTGGAGATCC
TCAAGCAGTTGATCCTTTTATTTCTTTACTTGGAGATGAACGTCATGAAATAAGGCAAAGTGCTGCAAATGGTCTGGGCA
AACTTGGAGATCAGAAAGCCGTTGGACCTCTCCTCAAAGCTATGGAGACTGAAAAGGAAAGGGATGTTAGGGTTGCGGAG
ATCCGGGCTCTTGGGGAACTCGGAGGACCGGAAGCTGTCGAGGGTTTGCGCCGGATCAGCACGGATATGGAAGAATATAG
GAATGTCAGAACTGCTGCGGAGGAAGCACTCAATAATATAGAGGGAGGAAGGGAGGAGAATTACTCTCCTACTTCCTGA

Upstream 100 bases:

>100_bases
AGTGGAGATCGTTTCAGGATTAATGTGACTTCGACGTGGCAGAACAGGTCGGTTTCTGCTGAGTTGTTAGTTCCTCCTGG
AGGGAAAGGGGGTGATGCAT

Downstream 100 bases:

>100_bases
TACGCTGGAGGTAACAATGAGGCTTTATCAGCCTATCTCCCCGCTATACTGTGTCTTTTTCCCTGCCAGGGAGACCTGTG
CTCATGATGCATTTTCAATC

Product: phycocyanin subunit alpha

Products: NA

Alternate protein names: Phycocyanin-1 operon protein CpcE [H]

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MIKLCELLGSRSAKLFLLLLLFSGICAGCLGQEPIEARVDKLVRSLGNEDRNVSYASAYALIDIGEPSVNSLIKTLEDDN
PQVRSLAAYSLGRIGEPRASKPLIEALEDPEPEVRMNSAEALGELKAPEAADLLIELLDDDNDEVRSKAVFALGAIGDPK
AALALIELFDDRELGRSAAGAVGNLGDEEAVEKLIELLDSRNPDVRINSIRALGQIQNPAAVPYLVEMLDDKVPEVREEA
ASALGYFKGPKEIARTEQPLIDALGDDEFEVQKAAAYSLGDIGSKEAIPFIVAFLQAENPALHSVAVHALGRYNDPDATA
ALIDALDDESRHVRLVIVHFLSETGDPQAVDPFISLLGDERHEIRQSAANGLGKLGDQKAVGPLLKAMETEKERDVRVAE
IRALGELGGPEAVEGLRRISTDMEEYRNVRTAAEEALNNIEGGREENYSPTS

Sequences:

>Translated_452_residues
MIKLCELLGSRSAKLFLLLLLFSGICAGCLGQEPIEARVDKLVRSLGNEDRNVSYASAYALIDIGEPSVNSLIKTLEDDN
PQVRSLAAYSLGRIGEPRASKPLIEALEDPEPEVRMNSAEALGELKAPEAADLLIELLDDDNDEVRSKAVFALGAIGDPK
AALALIELFDDRELGRSAAGAVGNLGDEEAVEKLIELLDSRNPDVRINSIRALGQIQNPAAVPYLVEMLDDKVPEVREEA
ASALGYFKGPKEIARTEQPLIDALGDDEFEVQKAAAYSLGDIGSKEAIPFIVAFLQAENPALHSVAVHALGRYNDPDATA
ALIDALDDESRHVRLVIVHFLSETGDPQAVDPFISLLGDERHEIRQSAANGLGKLGDQKAVGPLLKAMETEKERDVRVAE
IRALGELGGPEAVEGLRRISTDMEEYRNVRTAAEEALNNIEGGREENYSPTS
>Mature_452_residues
MIKLCELLGSRSAKLFLLLLLFSGICAGCLGQEPIEARVDKLVRSLGNEDRNVSYASAYALIDIGEPSVNSLIKTLEDDN
PQVRSLAAYSLGRIGEPRASKPLIEALEDPEPEVRMNSAEALGELKAPEAADLLIELLDDDNDEVRSKAVFALGAIGDPK
AALALIELFDDRELGRSAAGAVGNLGDEEAVEKLIELLDSRNPDVRINSIRALGQIQNPAAVPYLVEMLDDKVPEVREEA
ASALGYFKGPKEIARTEQPLIDALGDDEFEVQKAAAYSLGDIGSKEAIPFIVAFLQAENPALHSVAVHALGRYNDPDATA
ALIDALDDESRHVRLVIVHFLSETGDPQAVDPFISLLGDERHEIRQSAANGLGKLGDQKAVGPLLKAMETEKERDVRVAE
IRALGELGGPEAVEGLRRISTDMEEYRNVRTAAEEALNNIEGGREENYSPTS

Specific function: Required for the chromophorylation of the cpcA1 gene product [H]

COG id: COG1413

COG function: function code C; FOG: HEAT repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcE/RpcE/PecE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR004155 [H]

Pfam domain/function: PF03130 HEAT_PBS [H]

EC number: NA

Molecular weight: Translated: 48816; Mature: 48816

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: PS50077 HEAT_REPEAT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKLCELLGSRSAKLFLLLLLFSGICAGCLGQEPIEARVDKLVRSLGNEDRNVSYASAYA
CCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHEE
LIDIGEPSVNSLIKTLEDDNPQVRSLAAYSLGRIGEPRASKPLIEALEDPEPEVRMNSAE
EEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHH
ALGELKAPEAADLLIELLDDDNDEVRSKAVFALGAIGDPKAALALIELFDDRELGRSAAG
HHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHC
AVGNLGDEEAVEKLIELLDSRNPDVRINSIRALGQIQNPAAVPYLVEMLDDKVPEVREEA
CCCCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHH
ASALGYFKGPKEIARTEQPLIDALGDDEFEVQKAAAYSLGDIGSKEAIPFIVAFLQAENP
HHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
ALHSVAVHALGRYNDPDATAALIDALDDESRHVRLVIVHFLSETGDPQAVDPFISLLGDE
HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCH
RHEIRQSAANGLGKLGDQKAVGPLLKAMETEKERDVRVAEIRALGELGGPEAVEGLRRIS
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHH
TDMEEYRNVRTAAEEALNNIEGGREENYSPTS
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MIKLCELLGSRSAKLFLLLLLFSGICAGCLGQEPIEARVDKLVRSLGNEDRNVSYASAYA
CCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHEE
LIDIGEPSVNSLIKTLEDDNPQVRSLAAYSLGRIGEPRASKPLIEALEDPEPEVRMNSAE
EEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHH
ALGELKAPEAADLLIELLDDDNDEVRSKAVFALGAIGDPKAALALIELFDDRELGRSAAG
HHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHC
AVGNLGDEEAVEKLIELLDSRNPDVRINSIRALGQIQNPAAVPYLVEMLDDKVPEVREEA
CCCCCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHH
ASALGYFKGPKEIARTEQPLIDALGDDEFEVQKAAAYSLGDIGSKEAIPFIVAFLQAENP
HHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
ALHSVAVHALGRYNDPDATAALIDALDDESRHVRLVIVHFLSETGDPQAVDPFISLLGDE
HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCH
RHEIRQSAANGLGKLGDQKAVGPLLKAMETEKERDVRVAEIRALGELGGPEAVEGLRRIS
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHH
TDMEEYRNVRTAAEEALNNIEGGREENYSPTS
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA