| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226536
Identifier: 21226536
GI number: 21226536
Start: 553883
End: 554761
Strand: Direct
Name: 21226536
Synonym: MM_0434
Alternate gene names: NA
Gene position: 553883-554761 (Clockwise)
Preceding gene: 21226535
Following gene: 21226547
Centisome position: 13.52
GC content: 38.0
Gene sequence:
>879_bases ATGTCTGTACTCAGCATAATTGCCTGTGAAATGCTTGAAGACGAACTTGTTTATGTCCTCTCAAAAGATCAGAACGCAGT ACGTTTGATCCTGGTTGAAAACAGGCAATGTTTCAGGTTTGTTAGAAAACTTAAATCCGGAAATTGCCAGGCCAGGATTT TTCCTCCGGAAAGGATATCTTTTTTCATAAAACAGATGAATCGTCCCGCATCCATGAAAATTCCCAATTTTCTATTGAAG TTTCCATTTTTTGGGAAAATACATGAGAATATGAAAGAAAAGAACAGAGAAACAATCACCGTAGTGGTAAACATTCTGAA GCTTGGCCTGCATGCAGATTGTGACCTTTTAAAGTCTGAAATCTACCGAAATATGAAGGAAATGGTAGAATTTTCAGATG GAATTCTTATATTTTATGGGAACTGCGGACGCCCGTTAAGGGGCCTGGAAGCTGAGTTCAAAGATTTTAATTGCCCTCTC TATTTTCTCGAAGATGAAAAAGGAAATATTGTAGATGACTGTATCAGCATAGCTCTTGGAGGCAACGATAATTATGCTGA GGTTATGCAGAGTGGGAACGGCACAGGTATGATATACCTGACACCTATGTGGGCTTCCAGCTGGAAAGAAATGAGAATGG AACCTGGTGACACTTCTGACTTCAATGTAAGCTTTTTGAAAAGACATTATAGAAAGGTTGTCAAAATAAGTAATGAGATT TCTATGGGAAGCGAATTTGATAAAAATGTCTTAAATTATGCCCGGACTTTTGATATGAGTATTATTGAAATGAAAGGCAG TATGGAAATTGCAATGAAGTCCTATATGAATGCCAGGAACGGAATCTGCAAAAAAGATCCGATTCAGAAAAGCAGCTGA
Upstream 100 bases:
>100_bases CAGAAAATTTTTGAAGATTGCTATAACGAACTCAAAGCGGAACTTTAGGAAAAATCAAAAGGTTGAATAGATTTGGTATT TATAAACTAATGGTGAGAGG
Downstream 100 bases:
>100_bases ATGATCCCACTTAGGTCGTTTTCCAATTAGCTTAAAAAATTAAACTGGAGATTAGATAATAATTGTGGAATCGTTAAAGT TTGTGGAACCGATTATCTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 292; Mature: 291
Protein sequence:
>292_residues MSVLSIIACEMLEDELVYVLSKDQNAVRLILVENRQCFRFVRKLKSGNCQARIFPPERISFFIKQMNRPASMKIPNFLLK FPFFGKIHENMKEKNRETITVVVNILKLGLHADCDLLKSEIYRNMKEMVEFSDGILIFYGNCGRPLRGLEAEFKDFNCPL YFLEDEKGNIVDDCISIALGGNDNYAEVMQSGNGTGMIYLTPMWASSWKEMRMEPGDTSDFNVSFLKRHYRKVVKISNEI SMGSEFDKNVLNYARTFDMSIIEMKGSMEIAMKSYMNARNGICKKDPIQKSS
Sequences:
>Translated_292_residues MSVLSIIACEMLEDELVYVLSKDQNAVRLILVENRQCFRFVRKLKSGNCQARIFPPERISFFIKQMNRPASMKIPNFLLK FPFFGKIHENMKEKNRETITVVVNILKLGLHADCDLLKSEIYRNMKEMVEFSDGILIFYGNCGRPLRGLEAEFKDFNCPL YFLEDEKGNIVDDCISIALGGNDNYAEVMQSGNGTGMIYLTPMWASSWKEMRMEPGDTSDFNVSFLKRHYRKVVKISNEI SMGSEFDKNVLNYARTFDMSIIEMKGSMEIAMKSYMNARNGICKKDPIQKSS >Mature_291_residues SVLSIIACEMLEDELVYVLSKDQNAVRLILVENRQCFRFVRKLKSGNCQARIFPPERISFFIKQMNRPASMKIPNFLLKF PFFGKIHENMKEKNRETITVVVNILKLGLHADCDLLKSEIYRNMKEMVEFSDGILIFYGNCGRPLRGLEAEFKDFNCPLY FLEDEKGNIVDDCISIALGGNDNYAEVMQSGNGTGMIYLTPMWASSWKEMRMEPGDTSDFNVSFLKRHYRKVVKISNEIS MGSEFDKNVLNYARTFDMSIIEMKGSMEIAMKSYMNARNGICKKDPIQKSS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33635; Mature: 33503
Theoretical pI: Translated: 8.19; Mature: 8.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 6.2 %Met (Translated Protein) 8.9 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 5.8 %Met (Mature Protein) 8.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVLSIIACEMLEDELVYVLSKDQNAVRLILVENRQCFRFVRKLKSGNCQARIFPPERIS CCHHHHHHHHHHHHHEEEEEECCCCEEEEEEECCHHHHHHHHHHHCCCCEEEECCHHHHH FFIKQMNRPASMKIPNFLLKFPFFGKIHENMKEKNRETITVVVNILKLGLHADCDLLKSE HHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHH IYRNMKEMVEFSDGILIFYGNCGRPLRGLEAEFKDFNCPLYFLEDEKGNIVDDCISIALG HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHCCCCCCEEEEECCCCCHHHHHHHEEEC GNDNYAEVMQSGNGTGMIYLTPMWASSWKEMRMEPGDTSDFNVSFLKRHYRKVVKISNEI CCCCHHHHHHCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCHH SMGSEFDKNVLNYARTFDMSIIEMKGSMEIAMKSYMNARNGICKKDPIQKSS CCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SVLSIIACEMLEDELVYVLSKDQNAVRLILVENRQCFRFVRKLKSGNCQARIFPPERIS CHHHHHHHHHHHHHEEEEEECCCCEEEEEEECCHHHHHHHHHHHCCCCEEEECCHHHHH FFIKQMNRPASMKIPNFLLKFPFFGKIHENMKEKNRETITVVVNILKLGLHADCDLLKSE HHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHH IYRNMKEMVEFSDGILIFYGNCGRPLRGLEAEFKDFNCPLYFLEDEKGNIVDDCISIALG HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHCCCCCCEEEEECCCCCHHHHHHHEEEC GNDNYAEVMQSGNGTGMIYLTPMWASSWKEMRMEPGDTSDFNVSFLKRHYRKVVKISNEI CCCCHHHHHHCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCHH SMGSEFDKNVLNYARTFDMSIIEMKGSMEIAMKSYMNARNGICKKDPIQKSS CCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA