| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is gspE [C]
Identifier: 21226515
GI number: 21226515
Start: 525477
End: 527324
Strand: Reverse
Name: gspE [C]
Synonym: MM_0413
Alternate gene names: 21226515
Gene position: 527324-525477 (Counterclockwise)
Preceding gene: 21226516
Following gene: 21226514
Centisome position: 12.87
GC content: 44.05
Gene sequence:
>1848_bases ATGGAAGCTCTGCCTTTTAACCCGTTGCCTGCACCGGAGAATGGGGGGCGTTCCAGAAAAGAGGTATATGCAATCCTTTC TCCGGAAATGCAGGAGTTCGTTGGCAGGGAAGAAAATCACCATATCCTTGATTATATCTGCAGGCTTCCAGCGGAAGAAA TAGGATTTCCGGAGTTCTACCCGAGAATTTCCAGGTCCATGAAAAGCATTAAACGCCCCAATCTGATTTATCCTGCCGGA AAAGGGCTTGCTGTTCATATATATCCGGATAAGGAAGACGTAAGGAATTACTACATTCCCATAGAGCCCTGCCTGTTCCA AAAACTGGACAGCATGCTTGAGGAAGTGGAAAAATTACTCATTGACGTGATACATGACCAGGAAATTAATACAAATGACC CTGAGGAAAAAAAGAAACTTCTCGTAAAGGCTCTTGAAAAGACCTGTGATGTAAAAGAGAATTTGAAGGAAAAACCCGGA AAATCAGAAGAAAAAGGCGGACAAAATCAAAAAGATACAGATCAGAAAAAAAATAAGGAAAAAGATTCCCTGAAAGAAGG AAAGAATGACGGAAAAACCGGATTTATCGGAAACCTTAAGGGAGCCGGTAAATTATTCGGTTCAGGAAAACCGAAGAAAA TTTCCGTAACTCCTCAGGAATTCAATGCAATCAAATATCGGATGGTCAGGGATAAGGTGGGGATGGGAGTGCTCGAACCT TTACTGCTTGACTCAAACATAGAAGATATAAGCTGCAGCGGTCTTGGAAGGATCTTTGTTGAGCATAAGGTATTTTCGTC CCTTAAAACAACAATCTCGTTTGAGGAAATTGAAGAACTCAATTCTTTTGTCATACAGATGTCCGAAAAAGTAGGAAAGC CGATCACCTACAGGGACCCTATAGTAGATACGGCTCTTCCGGACGGGTCAAGGATTAATATCGTATTCGGAGAAGATGTA TCAAAACGTGGGAGCAATTTTACAATCAGGAAATTCATGGGAGTCCCAATTTCAATCCTCGAACTTGTAGAGTTCGGTAC AATTGACTATACAATGGCTGCATACATGTGGATGATGCTCAGGGCAGGGATGAACTGTTTTGTTTCGGGAGAAACAGCTT CCGGGAAGACCACAATGATGAACGCTGTGACCACTTTCCTTCCTCCGGATTCAAAAATAGTCTCTATAGAAGACACACCG GAATTGCAGGTTCCCCACAAGAACTGGACCCGTGAGGTTACAAGGACTACGAGGGACGACAGCGGGTCTGATGTTTCCAT GTTTGACCTCCTTAAGGCAGCCCTGCGACAGCGCCCGAATGAGATTATGATAGGAGAGATCCGTGGGGTTGAGGGAAGTA TCGCTTTTCAGGCGATGCAAACAGGGCACCCGGTAATGTCAACGTTCCATGCAGCATCGGTTGAAAAACTGATCCAGAGG CTTACCGGAGACCCCATAAATGTGCCCAAAAATTATGTGGATAACCTGAATGTGGTCATTATCCAGAGTGCTGTAAACGT CCCCGGGAAAGGGCTTGGAAGAAGGGTACTGAGCATAAACGAGATAGTTGGCTATGATGCTGTGAACCAGGCTTTTAATT TTATGGATATTTTCAAATGGGACCCTGCGACAGATACGTTCAAATTCACGGGAAAAAACAACTCCTACCTTCTGGAACAT AAAATTGCCCCGCGAATGGGAATTCCCGAAACCCAGGTCAGGAAGATATACTCTGAGCTTGACAGGAGATCAAAAATCCT GAGAAAAATCCACCAGGCAAATATTACGAATTTCTATGACCTGTTTACTACCCTGATCCAGCTTGAGGAAGCGGGGGTAA TATCATGA
Upstream 100 bases:
>100_bases GCTGAAAATAATTCCTGTTTCAAAGATTAAAGCCTGAAAAAATGAAAAAAGCGTCCGGAGAGATGGTTCCCGGAAAGAAA AACCCGAATGAGGAATCTAG
Downstream 100 bases:
>100_bases ATTATGCAGAGATGGCTCCGTACTTAAAAATAAATTCTGCGAAGCGGGGAGTTGAAGGGTATTTCAGTCTTGCCCGAAAA CTGAAGAGCACAAAAGTCGT
Product: flagella-like protein FlaI
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 615; Mature: 615
Protein sequence:
>615_residues MEALPFNPLPAPENGGRSRKEVYAILSPEMQEFVGREENHHILDYICRLPAEEIGFPEFYPRISRSMKSIKRPNLIYPAG KGLAVHIYPDKEDVRNYYIPIEPCLFQKLDSMLEEVEKLLIDVIHDQEINTNDPEEKKKLLVKALEKTCDVKENLKEKPG KSEEKGGQNQKDTDQKKNKEKDSLKEGKNDGKTGFIGNLKGAGKLFGSGKPKKISVTPQEFNAIKYRMVRDKVGMGVLEP LLLDSNIEDISCSGLGRIFVEHKVFSSLKTTISFEEIEELNSFVIQMSEKVGKPITYRDPIVDTALPDGSRINIVFGEDV SKRGSNFTIRKFMGVPISILELVEFGTIDYTMAAYMWMMLRAGMNCFVSGETASGKTTMMNAVTTFLPPDSKIVSIEDTP ELQVPHKNWTREVTRTTRDDSGSDVSMFDLLKAALRQRPNEIMIGEIRGVEGSIAFQAMQTGHPVMSTFHAASVEKLIQR LTGDPINVPKNYVDNLNVVIIQSAVNVPGKGLGRRVLSINEIVGYDAVNQAFNFMDIFKWDPATDTFKFTGKNNSYLLEH KIAPRMGIPETQVRKIYSELDRRSKILRKIHQANITNFYDLFTTLIQLEEAGVIS
Sequences:
>Translated_615_residues MEALPFNPLPAPENGGRSRKEVYAILSPEMQEFVGREENHHILDYICRLPAEEIGFPEFYPRISRSMKSIKRPNLIYPAG KGLAVHIYPDKEDVRNYYIPIEPCLFQKLDSMLEEVEKLLIDVIHDQEINTNDPEEKKKLLVKALEKTCDVKENLKEKPG KSEEKGGQNQKDTDQKKNKEKDSLKEGKNDGKTGFIGNLKGAGKLFGSGKPKKISVTPQEFNAIKYRMVRDKVGMGVLEP LLLDSNIEDISCSGLGRIFVEHKVFSSLKTTISFEEIEELNSFVIQMSEKVGKPITYRDPIVDTALPDGSRINIVFGEDV SKRGSNFTIRKFMGVPISILELVEFGTIDYTMAAYMWMMLRAGMNCFVSGETASGKTTMMNAVTTFLPPDSKIVSIEDTP ELQVPHKNWTREVTRTTRDDSGSDVSMFDLLKAALRQRPNEIMIGEIRGVEGSIAFQAMQTGHPVMSTFHAASVEKLIQR LTGDPINVPKNYVDNLNVVIIQSAVNVPGKGLGRRVLSINEIVGYDAVNQAFNFMDIFKWDPATDTFKFTGKNNSYLLEH KIAPRMGIPETQVRKIYSELDRRSKILRKIHQANITNFYDLFTTLIQLEEAGVIS >Mature_615_residues MEALPFNPLPAPENGGRSRKEVYAILSPEMQEFVGREENHHILDYICRLPAEEIGFPEFYPRISRSMKSIKRPNLIYPAG KGLAVHIYPDKEDVRNYYIPIEPCLFQKLDSMLEEVEKLLIDVIHDQEINTNDPEEKKKLLVKALEKTCDVKENLKEKPG KSEEKGGQNQKDTDQKKNKEKDSLKEGKNDGKTGFIGNLKGAGKLFGSGKPKKISVTPQEFNAIKYRMVRDKVGMGVLEP LLLDSNIEDISCSGLGRIFVEHKVFSSLKTTISFEEIEELNSFVIQMSEKVGKPITYRDPIVDTALPDGSRINIVFGEDV SKRGSNFTIRKFMGVPISILELVEFGTIDYTMAAYMWMMLRAGMNCFVSGETASGKTTMMNAVTTFLPPDSKIVSIEDTP ELQVPHKNWTREVTRTTRDDSGSDVSMFDLLKAALRQRPNEIMIGEIRGVEGSIAFQAMQTGHPVMSTFHAASVEKLIQR LTGDPINVPKNYVDNLNVVIIQSAVNVPGKGLGRRVLSINEIVGYDAVNQAFNFMDIFKWDPATDTFKFTGKNNSYLLEH KIAPRMGIPETQVRKIYSELDRRSKILRKIHQANITNFYDLFTTLIQLEEAGVIS
Specific function: Involved In A General Secretion Pathway (Gsp) For The Export Of Proteins (By Similarity). [C]
COG id: COG0630
COG function: function code NU; Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP E family [H]
Homologues:
Organism=Escherichia coli, GI1789723, Length=117, Percent_Identity=38.4615384615385, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1786296, Length=117, Percent_Identity=39.3162393162393, Blast_Score=66, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001482 [H]
Pfam domain/function: PF00437 GSPII_E [H]
EC number: NA
Molecular weight: Translated: 69316; Mature: 69316
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEALPFNPLPAPENGGRSRKEVYAILSPEMQEFVGREENHHILDYICRLPAEEIGFPEFY CCCCCCCCCCCCCCCCCCHHHEEEHCCHHHHHHCCCCCCCHHHHHHHHCCHHHCCCCHHH PRISRSMKSIKRPNLIYPAGKGLAVHIYPDKEDVRNYYIPIEPCLFQKLDSMLEEVEKLL HHHHHHHHHHCCCCEEEECCCCEEEEEECCHHHHCCEECCCCHHHHHHHHHHHHHHHHHH IDVIHDQEINTNDPEEKKKLLVKALEKTCDVKENLKEKPGKSEEKGGQNQKDTDQKKNKE HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHCCCCCCCCHHHHCCH KDSLKEGKNDGKTGFIGNLKGAGKLFGSGKPKKISVTPQEFNAIKYRMVRDKVGMGVLEP HHHHHCCCCCCCCCEEECCCCCCHHCCCCCCCEEEECHHHHHHHHHHHHHHHHCCHHHHH LLLDSNIEDISCSGLGRIFVEHKVFSSLKTTISFEEIEELNSFVIQMSEKVGKPITYRDP HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCC IVDTALPDGSRINIVFGEDVSKRGSNFTIRKFMGVPISILELVEFGTIDYTMAAYMWMML CHHCCCCCCCEEEEEECCCHHCCCCCEEEHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHH RAGMNCFVSGETASGKTTMMNAVTTFLPPDSKIVSIEDTPELQVPHKNWTREVTRTTRDD HCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCC SGSDVSMFDLLKAALRQRPNEIMIGEIRGVEGSIAFQAMQTGHPVMSTFHAASVEKLIQR CCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH LTGDPINVPKNYVDNLNVVIIQSAVNVPGKGLGRRVLSINEIVGYDAVNQAFNFMDIFKW HCCCCCCCCHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHEEC DPATDTFKFTGKNNSYLLEHKIAPRMGIPETQVRKIYSELDRRSKILRKIHQANITNFYD CCCCCCEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH LFTTLIQLEEAGVIS HHHHHHHHHHCCCCC >Mature Secondary Structure MEALPFNPLPAPENGGRSRKEVYAILSPEMQEFVGREENHHILDYICRLPAEEIGFPEFY CCCCCCCCCCCCCCCCCCHHHEEEHCCHHHHHHCCCCCCCHHHHHHHHCCHHHCCCCHHH PRISRSMKSIKRPNLIYPAGKGLAVHIYPDKEDVRNYYIPIEPCLFQKLDSMLEEVEKLL HHHHHHHHHHCCCCEEEECCCCEEEEEECCHHHHCCEECCCCHHHHHHHHHHHHHHHHHH IDVIHDQEINTNDPEEKKKLLVKALEKTCDVKENLKEKPGKSEEKGGQNQKDTDQKKNKE HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHCCCCCCCCHHHHCCH KDSLKEGKNDGKTGFIGNLKGAGKLFGSGKPKKISVTPQEFNAIKYRMVRDKVGMGVLEP HHHHHCCCCCCCCCEEECCCCCCHHCCCCCCCEEEECHHHHHHHHHHHHHHHHCCHHHHH LLLDSNIEDISCSGLGRIFVEHKVFSSLKTTISFEEIEELNSFVIQMSEKVGKPITYRDP HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCC IVDTALPDGSRINIVFGEDVSKRGSNFTIRKFMGVPISILELVEFGTIDYTMAAYMWMML CHHCCCCCCCEEEEEECCCHHCCCCCEEEHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHH RAGMNCFVSGETASGKTTMMNAVTTFLPPDSKIVSIEDTPELQVPHKNWTREVTRTTRDD HCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCC SGSDVSMFDLLKAALRQRPNEIMIGEIRGVEGSIAFQAMQTGHPVMSTFHAASVEKLIQR CCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH LTGDPINVPKNYVDNLNVVIIQSAVNVPGKGLGRRVLSINEIVGYDAVNQAFNFMDIFKW HCCCCCCCCHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHEEC DPATDTFKFTGKNNSYLLEHKIAPRMGIPETQVRKIYSELDRRSKILRKIHQANITNFYD CCCCCCEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH LFTTLIQLEEAGVIS HHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]