Click here to switch to the map view.

The map label for this gene is yncE [C]

Identifier: 21226497

GI number: 21226497

Start: 507430

End: 508689

Strand: Reverse

Name: yncE [C]

Synonym: MM_0395

Alternate gene names: 21226497

Gene position: 508689-507430 (Counterclockwise)

Preceding gene: 21226498

Following gene: 21226496

Centisome position: 12.42

GC content: 39.92

Gene sequence:

>1260_bases
ATGAAAGAAATAATATGTGATAAAGCATGTCAGCGTATCCTTATAAAAGCTTTTGTAATAATGGCGCTTGCACTTATAGT
AAAGGCGAATATCACATATGCAGCTCCATTTGCATATGTGACAAGTCCGGGGAAAAACATCAACATTGGCACTGTCTTTG
TAATTGACACAAAAACTAATAATCTTACAACCATGGTGGAGATTGAAGGCTACCCTGGCAAAGTTGCAGCCACACCAGAT
GGAACGAAAATATATGTGACAGATTCAAGTATAGGTAGCACTACTGTCTCTGTAATTAACACAGAAACAAATACACGAAG
TGCCACAGTGGATGTAGGAGGAAGTTCTTGTGGAGTTGCCATTAACCCGACAGGAACGAGGGCATATGTGGCGATCCGTG
ACAGTAACACTGTCTCAGTAATTAGTACAGCCACAAACAGTGTGATAGATACTTTAAATGTTGGAACTGATCCTTGGGCA
GTGGCTATCAATCCAGATGGAACGAAACTATATGTCACGAACCGTCGCAGCAACACTACTTCTGTAATTAACACGGCTAC
AAACAATATTATAGCCACTGTAAATGTAGGAAATTTTCCGATTGGAGTTGCAGTCACTCCAGATGGAACAAAAGTTTATG
TGTTGAACGCTCGCAGTAATAATGTCTCTGTAATTGACACAGCAACTAATAATGTTACAACTACAATTTCTGTGGGAAAT
CGTCCTGGTAGAGTTGCAGTCACTCCGAATGGAAAAAGGGTATACGTAACGAACTGGGAAGATGATTCGGTTTCCGTAAT
TGACACAGCAACTAATGATGTTACAACTACAATTTCTGTAGGAACTCATCCAAATGGAGTTGCAGTCGATCCAGATGGAA
CAAAAGTATATGTGGCGAATTATGACAGCAATAACCTCTCCGTAATTGACGTAGCCACAAATAATGTTATAGCCATTGTA
AATGTAGGATATCATCCATCAGGAGTTGCTTTTGGCCATTTTATAGATTCTAATACGACTGGTCAAAGTACAGGGACAAA
CTCCAGTTCAACTGAAAATTCAGGAGTTGAAGAAACTAACTTATCATCTGAAGAAAAAAACGCTCTCAAACTCAGTAGTT
CAAACAATAATAATTCTGAATCGGGTAACGGTAGTAGCTCAGGTGAAAATGAATCGAGCAAAAATAGTTCTACTCCAGGA
TTCGGGTTATTGGGAGGCTTGGCCGGCCTGTACGGTGGATGGAAGTTCAGAAAGAAGTAA

Upstream 100 bases:

>100_bases
CCGTTAACTATAACCTGAATAGTTACAATTTAATTTATAAATAAAGTTATTCCATCCTGAAATTATCTCAACTGTAAGAG
TCTATAAAAGGGAGGCTAAA

Downstream 100 bases:

>100_bases
CAGGGGGATCGGAGGGATCGGATATTCAAAAGTCCTTGGCGACATTTGTTCATTTCCTATCCGGATTGATACACAAGCAT
TTGTAAACCATTAATTCTGA

Product: putative surface layer protein

Products: NA

Alternate protein names: 40-Residue YVTN Family Beta-Propeller Repeat Protein; Surface Antigen Gene; Surface Layer Protein; Cell Surface Protein; YVTN Family Beta-Propeller Repeat Protein; 40-Residue Yvtn Family Beta-Propeller Repeat Protein; Yvtn Beta-Propeller Repeat-Containing Protein; PE-PGRS Family Protein; Vegetative Incompatibility; Beta-Propeller Fold Protein; Surface Antigen; Yvtn Beta-Propeller Repeat Family Protein; Beta-Propeller Repeat-Containing Protein; Triple Helix Repeat-Containing Collagen; YVTN Family Beta-Propeller Repeat-Containing Protein; WD40 Domain-Containing Protein; Outer Membrane Protein; Alpha-1 2-Mannosidase; Glycine-Rich Cell Wall Protein; YVTN Beta-Propeller Repeat Family Protein; PE_PGRS Family Protein; Phosphoesterase; Signal Peptide; Beta-Propeller Repeat Protein YVTN Family; SGL Domain-Containing Protein; LOW QUALITY PROTEIN Surface Antigen Protein; Surface Antigen-Like Protein; IPT/TIG Domain Protein; Serine/Threonine Protein Kinase; Secreted Protein; Transmembrane Protein; Alkaline Serine Protease; Lipoprotein; YVTN Family Beta-Propeller Repeat Family Protein

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MKEIICDKACQRILIKAFVIMALALIVKANITYAAPFAYVTSPGKNINIGTVFVIDTKTNNLTTMVEIEGYPGKVAATPD
GTKIYVTDSSIGSTTVSVINTETNTRSATVDVGGSSCGVAINPTGTRAYVAIRDSNTVSVISTATNSVIDTLNVGTDPWA
VAINPDGTKLYVTNRRSNTTSVINTATNNIIATVNVGNFPIGVAVTPDGTKVYVLNARSNNVSVIDTATNNVTTTISVGN
RPGRVAVTPNGKRVYVTNWEDDSVSVIDTATNDVTTTISVGTHPNGVAVDPDGTKVYVANYDSNNLSVIDVATNNVIAIV
NVGYHPSGVAFGHFIDSNTTGQSTGTNSSSTENSGVEETNLSSEEKNALKLSSSNNNNSESGNGSSSGENESSKNSSTPG
FGLLGGLAGLYGGWKFRKK

Sequences:

>Translated_419_residues
MKEIICDKACQRILIKAFVIMALALIVKANITYAAPFAYVTSPGKNINIGTVFVIDTKTNNLTTMVEIEGYPGKVAATPD
GTKIYVTDSSIGSTTVSVINTETNTRSATVDVGGSSCGVAINPTGTRAYVAIRDSNTVSVISTATNSVIDTLNVGTDPWA
VAINPDGTKLYVTNRRSNTTSVINTATNNIIATVNVGNFPIGVAVTPDGTKVYVLNARSNNVSVIDTATNNVTTTISVGN
RPGRVAVTPNGKRVYVTNWEDDSVSVIDTATNDVTTTISVGTHPNGVAVDPDGTKVYVANYDSNNLSVIDVATNNVIAIV
NVGYHPSGVAFGHFIDSNTTGQSTGTNSSSTENSGVEETNLSSEEKNALKLSSSNNNNSESGNGSSSGENESSKNSSTPG
FGLLGGLAGLYGGWKFRKK
>Mature_419_residues
MKEIICDKACQRILIKAFVIMALALIVKANITYAAPFAYVTSPGKNINIGTVFVIDTKTNNLTTMVEIEGYPGKVAATPD
GTKIYVTDSSIGSTTVSVINTETNTRSATVDVGGSSCGVAINPTGTRAYVAIRDSNTVSVISTATNSVIDTLNVGTDPWA
VAINPDGTKLYVTNRRSNTTSVINTATNNIIATVNVGNFPIGVAVTPDGTKVYVLNARSNNVSVIDTATNNVTTTISVGN
RPGRVAVTPNGKRVYVTNWEDDSVSVIDTATNDVTTTISVGTHPNGVAVDPDGTKVYVANYDSNNLSVIDVATNNVIAIV
NVGYHPSGVAFGHFIDSNTTGQSTGTNSSSTENSGVEETNLSSEEKNALKLSSSNNNNSESGNGSSSGENESSKNSSTPG
FGLLGGLAGLYGGWKFRKK

Specific function: Unknown

COG id: COG3391

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787724, Length=198, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43589; Mature: 43589

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEIICDKACQRILIKAFVIMALALIVKANITYAAPFAYVTSPGKNINIGTVFVIDTKTN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEEEECCCCCEEEEEEEEEEECCC
NLTTMVEIEGYPGKVAATPDGTKIYVTDSSIGSTTVSVINTETNTRSATVDVGGSSCGVA
CEEEEEEECCCCCEEEECCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCCCEE
INPTGTRAYVAIRDSNTVSVISTATNSVIDTLNVGTDPWAVAINPDGTKLYVTNRRSNTT
ECCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCC
SVINTATNNIIATVNVGNFPIGVAVTPDGTKVYVLNARSNNVSVIDTATNNVTTTISVGN
EEEEECCCCEEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEECC
RPGRVAVTPNGKRVYVTNWEDDSVSVIDTATNDVTTTISVGTHPNGVAVDPDGTKVYVAN
CCCEEEECCCCCEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCEEECCCCCEEEEEE
YDSNNLSVIDVATNNVIAIVNVGYHPSGVAFGHFIDSNTTGQSTGTNSSSTENSGVEETN
ECCCCEEEEEEECCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
LSSEEKNALKLSSSNNNNSESGNGSSSGENESSKNSSTPGFGLLGGLAGLYGGWKFRKK
CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEECC
>Mature Secondary Structure
MKEIICDKACQRILIKAFVIMALALIVKANITYAAPFAYVTSPGKNINIGTVFVIDTKTN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEEEECCCCCEEEEEEEEEEECCC
NLTTMVEIEGYPGKVAATPDGTKIYVTDSSIGSTTVSVINTETNTRSATVDVGGSSCGVA
CEEEEEEECCCCCEEEECCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCCCCEE
INPTGTRAYVAIRDSNTVSVISTATNSVIDTLNVGTDPWAVAINPDGTKLYVTNRRSNTT
ECCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCC
SVINTATNNIIATVNVGNFPIGVAVTPDGTKVYVLNARSNNVSVIDTATNNVTTTISVGN
EEEEECCCCEEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEECC
RPGRVAVTPNGKRVYVTNWEDDSVSVIDTATNDVTTTISVGTHPNGVAVDPDGTKVYVAN
CCCEEEECCCCCEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCEEECCCCCEEEEEE
YDSNNLSVIDVATNNVIAIVNVGYHPSGVAFGHFIDSNTTGQSTGTNSSSTENSGVEETN
ECCCCEEEEEEECCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
LSSEEKNALKLSSSNNNNSESGNGSSSGENESSKNSSTPGFGLLGGLAGLYGGWKFRKK
CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA