Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
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Accession | NC_003901 |
Length | 4,096,345 |
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The map label for this gene is 21226407
Identifier: 21226407
GI number: 21226407
Start: 408712
End: 408972
Strand: Direct
Name: 21226407
Synonym: MM_0305
Alternate gene names: NA
Gene position: 408712-408972 (Clockwise)
Preceding gene: 21226406
Following gene: 21226409
Centisome position: 9.98
GC content: 41.76
Gene sequence:
>261_bases ATGAGTGAAATACGTGAAGTCGACCGTTTTGAGTGCAGTGTTATAAGTGTGATCAAGAATCTGGCCTGGAAAGGTGTGAC AGTTGAAGAAAAAGGCACACAAGGAAGGGTGTACTTCGGAAGGGTTAACGGGGATATTGAAATAAACCCTGGAGACACAT TTTATCTTGGAATCAGGCCGATTTATGAAATAGAAGATAAGACCATGAGAGTTACACTCTACAACTCTGAAGACAAACCG CTTGACTGGACACTTGTTTGA
Upstream 100 bases:
>100_bases TCTGGGATAGTTTTATGTATGGAGATCATTATTTTCTATCAGAAACCATATTTCAGTAAAGTCTTAACGATATCCGAAAC AAGATTTAAAAGGGATTCCC
Downstream 100 bases:
>100_bases ACAGGTGATGGTAAAGCCGGGAAGTAATCCGGATAAAATAAAGATTCTTTCTACAGGTTTGTTTCCTGAAGAGAGATTTA ATCTACTTTTTAAACCTGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 86; Mature: 85
Protein sequence:
>86_residues MSEIREVDRFECSVISVIKNLAWKGVTVEEKGTQGRVYFGRVNGDIEINPGDTFYLGIRPIYEIEDKTMRVTLYNSEDKP LDWTLV
Sequences:
>Translated_86_residues MSEIREVDRFECSVISVIKNLAWKGVTVEEKGTQGRVYFGRVNGDIEINPGDTFYLGIRPIYEIEDKTMRVTLYNSEDKP LDWTLV >Mature_85_residues SEIREVDRFECSVISVIKNLAWKGVTVEEKGTQGRVYFGRVNGDIEINPGDTFYLGIRPIYEIEDKTMRVTLYNSEDKPL DWTLV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9945; Mature: 9814
Theoretical pI: Translated: 4.48; Mature: 4.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEIREVDRFECSVISVIKNLAWKGVTVEEKGTQGRVYFGRVNGDIEINPGDTFYLGIRP CCCHHHHHHCCHHHHHHHHHHCCCCCEEECCCCCCCEEEEEECCEEEECCCCEEEECCCE IYEIEDKTMRVTLYNSEDKPLDWTLV EEEECCCEEEEEEECCCCCCEEEEEC >Mature Secondary Structure SEIREVDRFECSVISVIKNLAWKGVTVEEKGTQGRVYFGRVNGDIEINPGDTFYLGIRP CCHHHHHHCCHHHHHHHHHHCCCCCEEECCCCCCCEEEEEECCEEEECCCCEEEECCCE IYEIEDKTMRVTLYNSEDKPLDWTLV EEEECCCEEEEEEECCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA