Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
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Accession | NC_003901 |
Length | 4,096,345 |
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The map label for this gene is 21226405
Identifier: 21226405
GI number: 21226405
Start: 405545
End: 406024
Strand: Reverse
Name: 21226405
Synonym: MM_0303
Alternate gene names: NA
Gene position: 406024-405545 (Counterclockwise)
Preceding gene: 21226408
Following gene: 21226400
Centisome position: 9.91
GC content: 42.29
Gene sequence:
>480_bases TTGCTTGTTTCTTCGGCAGGGGTAGCTTCCAGTGCCGGTGATGTTAAACCTGCCAGCACCTTTAAAACTTCTGTTAATTC CAGTGCAGAGAACGATCTTTATTCCGAATTAAGCGCGCAGATGGAGCTTTACAACGAGAACTTTGATAATGTGCCCTCGC TTGTTCAAAGGCTGGTTGGAAGTGAAGAGATTGCCGGGAGAATCAAGCTCAACAATGGTGAGATGCTCTATGTAACCTTA CTTATGAACGGTGGAAAAGTAGGAGACTTTTACAGATATGATACTCCTAACGATCCTAATTCTAAGTTCGGTCCTACCAT AACCGTTGAATCCGATGAAGACACAATAAGAGAGATCCTTAATTCGGATGACCGGTTGAGAAAATCTGTAGAAAAAATGA ACGACGGATCGCTTAAGGTAGAAATAGAAGGTTTTTTCCGAAAAACCGTGCTCTGGAGCATAAAGCAGCTATATTCGTAA
Upstream 100 bases:
>100_bases TTTCTGTCTATTGAGAACTTTTTTATATTCAGGACTCTTATTTTCAGTTATGATTTCTTGCAGTAAAAATAGAATCCTGA GTTTATTTCTGGTTATGCTT
Downstream 100 bases:
>100_bases GCGGACAATATATTTATGAGTTTCAAAAAGTCAAATCAGTATATAAAACCGGTTCATGGACTAAACTCAAAAACGAAATA AACTTCAAAAATTAATACAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 159; Mature: 159
Protein sequence:
>159_residues MLVSSAGVASSAGDVKPASTFKTSVNSSAENDLYSELSAQMELYNENFDNVPSLVQRLVGSEEIAGRIKLNNGEMLYVTL LMNGGKVGDFYRYDTPNDPNSKFGPTITVESDEDTIREILNSDDRLRKSVEKMNDGSLKVEIEGFFRKTVLWSIKQLYS
Sequences:
>Translated_159_residues MLVSSAGVASSAGDVKPASTFKTSVNSSAENDLYSELSAQMELYNENFDNVPSLVQRLVGSEEIAGRIKLNNGEMLYVTL LMNGGKVGDFYRYDTPNDPNSKFGPTITVESDEDTIREILNSDDRLRKSVEKMNDGSLKVEIEGFFRKTVLWSIKQLYS >Mature_159_residues MLVSSAGVASSAGDVKPASTFKTSVNSSAENDLYSELSAQMELYNENFDNVPSLVQRLVGSEEIAGRIKLNNGEMLYVTL LMNGGKVGDFYRYDTPNDPNSKFGPTITVESDEDTIREILNSDDRLRKSVEKMNDGSLKVEIEGFFRKTVLWSIKQLYS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17648; Mature: 17648
Theoretical pI: Translated: 4.41; Mature: 4.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVSSAGVASSAGDVKPASTFKTSVNSSAENDLYSELSAQMELYNENFDNVPSLVQRLVG CCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC SEEIAGRIKLNNGEMLYVTLLMNGGKVGDFYRYDTPNDPNSKFGPTITVESDEDTIREIL CHHHCCEEEECCCCEEEEEEEECCCCCCCCEECCCCCCCCCCCCCEEEEECCHHHHHHHH NSDDRLRKSVEKMNDGSLKVEIEGFFRKTVLWSIKQLYS CCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHCC >Mature Secondary Structure MLVSSAGVASSAGDVKPASTFKTSVNSSAENDLYSELSAQMELYNENFDNVPSLVQRLVG CCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC SEEIAGRIKLNNGEMLYVTLLMNGGKVGDFYRYDTPNDPNSKFGPTITVESDEDTIREIL CHHHCCEEEECCCCEEEEEEEECCCCCCCCEECCCCCCCCCCCCCEEEEECCHHHHHHHH NSDDRLRKSVEKMNDGSLKVEIEGFFRKTVLWSIKQLYS CCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA