Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
---|---|
Accession | NC_003901 |
Length | 4,096,345 |
Click here to switch to the map view.
The map label for this gene is 21226371
Identifier: 21226371
GI number: 21226371
Start: 360219
End: 360746
Strand: Direct
Name: 21226371
Synonym: MM_0269
Alternate gene names: NA
Gene position: 360219-360746 (Clockwise)
Preceding gene: 21226363
Following gene: 21226374
Centisome position: 8.79
GC content: 48.3
Gene sequence:
>528_bases ATGAAGAAAATTTCAACGATAATAGTAATGTTCCTCGTCACTGCTGCTGTTGTCTTTGCAGCCGGCTGTGCCGAAGAGCA AGAGAGCGCAGAAAATGAAACTCCAGCAGATGCCGAACAGGTTTCATCCGTAACTCCGGAAACGCCCGGCATAACAGATG AAACAGTGACTAATGGTGACACAACTCAGGGCGATCAGACCATAGAAACAGGGCAGATCATAACCGAAGCTGAAAACGGA AAAAGCATAAGGATCAAAAATGGAGAAATTTTTATCCTCCAGCTCAGGGAAAACCCGTCCACAGGCTATTCCTGGGAACT CAACGTGAGTGAGGGGCTCAATATTCTCAGCGACGGATATACCCAGGACCAGTCTCCCGAAGGTCAGGTTGGTGTGCCGG GAACTCATTCATGGACTATTGAAGCCGTGAGCCAGGGCAGCCAGCAGGTGAACGGAATATATAAGAGGCCCTGGGAGAAT ATGACCGGAACTGAGGAGAACTTTACACTTACTGTAGAGGTTGTTTGA
Upstream 100 bases:
>100_bases AAAAAGCCAGTAATATTAATACTGTAGTACAATAATCAGTAAAAATTACAATAAATCAGGCATTATGAAATAAAAGGAAA AGAGGTTTGAGGGAATGGTT
Downstream 100 bases:
>100_bases AAAGTATTTCGGGTTCTTGGGTTTTATTTTTACCTTTTTTACTATTTTTAATTTGAAAAATTTGTGGGGCTGGAAGATTT TCAGGAGCGGTATTTATAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 175; Mature: 175
Protein sequence:
>175_residues MKKISTIIVMFLVTAAVVFAAGCAEEQESAENETPADAEQVSSVTPETPGITDETVTNGDTTQGDQTIETGQIITEAENG KSIRIKNGEIFILQLRENPSTGYSWELNVSEGLNILSDGYTQDQSPEGQVGVPGTHSWTIEAVSQGSQQVNGIYKRPWEN MTGTEENFTLTVEVV
Sequences:
>Translated_175_residues MKKISTIIVMFLVTAAVVFAAGCAEEQESAENETPADAEQVSSVTPETPGITDETVTNGDTTQGDQTIETGQIITEAENG KSIRIKNGEIFILQLRENPSTGYSWELNVSEGLNILSDGYTQDQSPEGQVGVPGTHSWTIEAVSQGSQQVNGIYKRPWEN MTGTEENFTLTVEVV >Mature_175_residues MKKISTIIVMFLVTAAVVFAAGCAEEQESAENETPADAEQVSSVTPETPGITDETVTNGDTTQGDQTIETGQIITEAENG KSIRIKNGEIFILQLRENPSTGYSWELNVSEGLNILSDGYTQDQSPEGQVGVPGTHSWTIEAVSQGSQQVNGIYKRPWEN MTGTEENFTLTVEVV
Specific function: Unknown
COG id: COG5513
COG function: function code S; Predicted secreted protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18901; Mature: 18901
Theoretical pI: Translated: 3.78; Mature: 3.78
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKISTIIVMFLVTAAVVFAAGCAEEQESAENETPADAEQVSSVTPETPGITDETVTNGD CCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC TTQGDQTIETGQIITEAENGKSIRIKNGEIFILQLRENPSTGYSWELNVSEGLNILSDGY CCCCCCEEECCEEEEECCCCCEEEEECCCEEEEEEECCCCCCEEEEEEHHHCCHHHCCCC TQDQSPEGQVGVPGTHSWTIEAVSQGSQQVNGIYKRPWENMTGTEENFTLTVEVV CCCCCCCCCCCCCCCCCEEEHHHHCCCHHHCCHHCCCCCCCCCCCCCEEEEEEEC >Mature Secondary Structure MKKISTIIVMFLVTAAVVFAAGCAEEQESAENETPADAEQVSSVTPETPGITDETVTNGD CCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC TTQGDQTIETGQIITEAENGKSIRIKNGEIFILQLRENPSTGYSWELNVSEGLNILSDGY CCCCCCEEECCEEEEECCCCCEEEEECCCEEEEEEECCCCCCEEEEEEHHHCCHHHCCCC TQDQSPEGQVGVPGTHSWTIEAVSQGSQQVNGIYKRPWENMTGTEENFTLTVEVV CCCCCCCCCCCCCCCCCEEEHHHHCCCHHHCCHHCCCCCCCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA