| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226323
Identifier: 21226323
GI number: 21226323
Start: 300659
End: 302383
Strand: Reverse
Name: 21226323
Synonym: MM_0221
Alternate gene names: NA
Gene position: 302383-300659 (Counterclockwise)
Preceding gene: 21226324
Following gene: 21226322
Centisome position: 7.38
GC content: 49.33
Gene sequence:
>1725_bases ATGAAAGCACTTATTATAGACGGCTACGTAGACGAACCCGCCTGCCTGGGAGTCCCTCCCTATCTTTCCCCTTATCCAAG GTATATAGCAGGAGCTCTGAGAGAACGCGGGCTTTCTGAAAATGACATTCATTACCTGACTATTGACACCCTGAGGGAAA ATATTCCCGGAGCTGGCGAGCTTATTGGGAAGGCAGACCTTGTGGTTATTATTGCCGGCATGACCGTGCCCGGCAAATAT CTGCGTGCATCTCCCATCTCTCCCGGAGAAATTGAAGCAATTTTCGGGGCTGCAAAGGGAATAAAAGTTATGGGCGGCCC TATAAGGCTCGGCTTCAGCAGCGAAGGCGGGAGGGCTGCAAAGGGCACGGAAAGCGGCATAAGCCTCGGAGATGCCGTAC TTGCAAAAATGGACATTGAGGCTTTTATTTACGACCTTTTTGAGGACGGGATCGAAGGGGAAAGAAGTACTGGAAGCTTT CCTGTCAGGCTGAAAGATCAGGAGTCTATTGAGCACCGTTTCAGGACAACATCCGAGATCGGATGCTGGGGTGTCAGAGG GGCTTTTTTGATCAGGCAGCACCCGGATTACCCTCACTGCATGTGTGAGCTTGAAACATACAGGGGCTGCGGAAGGAAGG TTCACTGTTCTTTCTGCACTGAGCCTTTTTATGGGTCTTCGGACTACAGGCCCGTGGAGGATGTTGTTTCTGAAGTTTCC GCACTTTATTCTTACGGAGCACGCTATTTCAGAATCGGAAGGCAGCCTGACCTCTTTTCCTATCATGGGACAGACGCAGG TGGACCAGTGCCGAAGCCTGTGCCTGAGGTCCTTGAAAGGCTCTATAAAGGAATAAGGAATTCCGCACCCGGACTTTCCG TACTCCACATGGACAACGCAAACCCCATTACTCTTGCAACATATCCGGAAGAATCAGAGCAGATTCTGAAGACAATTGTC AAATTCCATACGCCGGGAGATGTGGCAGCTTTTGGTATGGAGACTGCCGATCCCGCAGTGGTTGCAGCAAATTCCCTCAA GGCGACCTCAGAAGAAGTCTTTGAAGCGATCAGGCTGGTCAACAGGTTTGGAGCTGTGCGCGGGGCAAACGGGCTTCCGG AAATTCTTCCGGGCATCAATTTTGTTCATGGCCTTATGGGCGAGACTAAAAAGACTTTCCAGCTCAACTATGCTTTCCTG CAAAAAGTTCTTGATTCGGGGCTTCTTCTCCGGAGGATCAATATCAGGCAGGTCATGGCATTTCCCGGAACTCCAATGTA CGGCAGGGACGAAGCTGCAAAGAAGCACAAGAAACTCTTTCTTGATTATAAAGAACGGGTCAGGAAGAATATCGACCTTC CAATGCTCAGGAAAGTAGTTCCTGAAGGTACTGTACTGAGAGATGTGATGTGTGAGGTTCACGACAGGGAAATCACTTTT GGAAGGCAGATCGGTTCTTATCCTCTGCTCGTGGGAATCCCTTCCCTCCTTCCTTTGCGGAAATTCACGGATATCACTGT CACAGGGCACGGTATGCGTTCGATTACCGGAATTCCTTATCCACTGCACATTAACTCTGCTTCCCTGACTCTTATTCGAT GTCTTCCCGGGATCGGTAAAAAAGCGGCTGCTTCCATAGCTGCCGGAGTTCCCTATTCAAACAGGGATGATTTTCTTAAA AGAGTAAGCGAGGGAGAAAAGGTCATCGACTTTATTGAAATTTAA
Upstream 100 bases:
>100_bases TATTTCTGCTTCTGTGTTGTTTTAATTACCCTTAATTTAATATCCAGCTGCGCTCTATACTTCAATCTCCGGTTATCAAA CAAAGGAAACAGGAACTTAT
Downstream 100 bases:
>100_bases TGCCCGAAAGAAGGTATGGTACTCTGGACTGTATGGCTCTTCTGGCTGATGTTTCGGTTCTTCAGGCTGATGCCTTTAAT TTTTGCTCTGGATAATCATA
Product: Fe-S oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 574; Mature: 574
Protein sequence:
>574_residues MKALIIDGYVDEPACLGVPPYLSPYPRYIAGALRERGLSENDIHYLTIDTLRENIPGAGELIGKADLVVIIAGMTVPGKY LRASPISPGEIEAIFGAAKGIKVMGGPIRLGFSSEGGRAAKGTESGISLGDAVLAKMDIEAFIYDLFEDGIEGERSTGSF PVRLKDQESIEHRFRTTSEIGCWGVRGAFLIRQHPDYPHCMCELETYRGCGRKVHCSFCTEPFYGSSDYRPVEDVVSEVS ALYSYGARYFRIGRQPDLFSYHGTDAGGPVPKPVPEVLERLYKGIRNSAPGLSVLHMDNANPITLATYPEESEQILKTIV KFHTPGDVAAFGMETADPAVVAANSLKATSEEVFEAIRLVNRFGAVRGANGLPEILPGINFVHGLMGETKKTFQLNYAFL QKVLDSGLLLRRINIRQVMAFPGTPMYGRDEAAKKHKKLFLDYKERVRKNIDLPMLRKVVPEGTVLRDVMCEVHDREITF GRQIGSYPLLVGIPSLLPLRKFTDITVTGHGMRSITGIPYPLHINSASLTLIRCLPGIGKKAAASIAAGVPYSNRDDFLK RVSEGEKVIDFIEI
Sequences:
>Translated_574_residues MKALIIDGYVDEPACLGVPPYLSPYPRYIAGALRERGLSENDIHYLTIDTLRENIPGAGELIGKADLVVIIAGMTVPGKY LRASPISPGEIEAIFGAAKGIKVMGGPIRLGFSSEGGRAAKGTESGISLGDAVLAKMDIEAFIYDLFEDGIEGERSTGSF PVRLKDQESIEHRFRTTSEIGCWGVRGAFLIRQHPDYPHCMCELETYRGCGRKVHCSFCTEPFYGSSDYRPVEDVVSEVS ALYSYGARYFRIGRQPDLFSYHGTDAGGPVPKPVPEVLERLYKGIRNSAPGLSVLHMDNANPITLATYPEESEQILKTIV KFHTPGDVAAFGMETADPAVVAANSLKATSEEVFEAIRLVNRFGAVRGANGLPEILPGINFVHGLMGETKKTFQLNYAFL QKVLDSGLLLRRINIRQVMAFPGTPMYGRDEAAKKHKKLFLDYKERVRKNIDLPMLRKVVPEGTVLRDVMCEVHDREITF GRQIGSYPLLVGIPSLLPLRKFTDITVTGHGMRSITGIPYPLHINSASLTLIRCLPGIGKKAAASIAAGVPYSNRDDFLK RVSEGEKVIDFIEI >Mature_574_residues MKALIIDGYVDEPACLGVPPYLSPYPRYIAGALRERGLSENDIHYLTIDTLRENIPGAGELIGKADLVVIIAGMTVPGKY LRASPISPGEIEAIFGAAKGIKVMGGPIRLGFSSEGGRAAKGTESGISLGDAVLAKMDIEAFIYDLFEDGIEGERSTGSF PVRLKDQESIEHRFRTTSEIGCWGVRGAFLIRQHPDYPHCMCELETYRGCGRKVHCSFCTEPFYGSSDYRPVEDVVSEVS ALYSYGARYFRIGRQPDLFSYHGTDAGGPVPKPVPEVLERLYKGIRNSAPGLSVLHMDNANPITLATYPEESEQILKTIV KFHTPGDVAAFGMETADPAVVAANSLKATSEEVFEAIRLVNRFGAVRGANGLPEILPGINFVHGLMGETKKTFQLNYAFL QKVLDSGLLLRRINIRQVMAFPGTPMYGRDEAAKKHKKLFLDYKERVRKNIDLPMLRKVVPEGTVLRDVMCEVHDREITF GRQIGSYPLLVGIPSLLPLRKFTDITVTGHGMRSITGIPYPLHINSASLTLIRCLPGIGKKAAASIAAGVPYSNRDDFLK RVSEGEKVIDFIEI
Specific function: Unknown
COG id: COG1031
COG function: function code C; Uncharacterized Fe-S oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR007197 [H]
Pfam domain/function: PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 63013; Mature: 63013
Theoretical pI: Translated: 7.55; Mature: 7.55
Prosite motif: PS00133 CARBOXYPEPT_ZN_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKALIIDGYVDEPACLGVPPYLSPYPRYIAGALRERGLSENDIHYLTIDTLRENIPGAGE CCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEHHHHHHCCCCHHH LIGKADLVVIIAGMTVPGKYLRASPISPGEIEAIFGAAKGIKVMGGPIRLGFSSEGGRAA HCCCCCEEEEEECCCCCCHHHCCCCCCCCHHHHHHHHHCCCEEECCEEEEEECCCCCCCC KGTESGISLGDAVLAKMDIEAFIYDLFEDGIEGERSTGSFPVRLKDQESIEHRFRTTSEI CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHCCCCC GCWGVRGAFLIRQHPDYPHCMCELETYRGCGRKVHCSFCTEPFYGSSDYRPVEDVVSEVS CCEECCCEEEEECCCCCCHHEEEEHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH ALYSYGARYFRIGRQPDLFSYHGTDAGGPVPKPVPEVLERLYKGIRNSAPGLSVLHMDNA HHHHCCCCEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCC NPITLATYPEESEQILKTIVKFHTPGDVAAFGMETADPAVVAANSLKATSEEVFEAIRLV CCEEEEECCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCEEEECCCCCHHHHHHHHHHHH NRFGAVRGANGLPEILPGINFVHGLMGETKKTFQLNYAFLQKVLDSGLLLRRINIRQVMA HHHCCCCCCCCCHHHHCCHHHHHHHHCCCCHHEEECHHHHHHHHHCCCEEEECCHHHHEE FPGTPMYGRDEAAKKHKKLFLDYKERVRKNIDLPMLRKVVPEGTVLRDVMCEVHDREITF CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHCCCEEEE GRQIGSYPLLVGIPSLLPLRKFTDITVTGHGMRSITGIPYPLHINSASLTLIRCLPGIGK CHHCCCCCCEEECCCHHCHHHCCEEEEECCCCHHCCCCCCEEEECCCHHHHHHHCCCCCH KAAASIAAGVPYSNRDDFLKRVSEGEKVIDFIEI HHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHCC >Mature Secondary Structure MKALIIDGYVDEPACLGVPPYLSPYPRYIAGALRERGLSENDIHYLTIDTLRENIPGAGE CCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEHHHHHHCCCCHHH LIGKADLVVIIAGMTVPGKYLRASPISPGEIEAIFGAAKGIKVMGGPIRLGFSSEGGRAA HCCCCCEEEEEECCCCCCHHHCCCCCCCCHHHHHHHHHCCCEEECCEEEEEECCCCCCCC KGTESGISLGDAVLAKMDIEAFIYDLFEDGIEGERSTGSFPVRLKDQESIEHRFRTTSEI CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHCCCCC GCWGVRGAFLIRQHPDYPHCMCELETYRGCGRKVHCSFCTEPFYGSSDYRPVEDVVSEVS CCEECCCEEEEECCCCCCHHEEEEHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH ALYSYGARYFRIGRQPDLFSYHGTDAGGPVPKPVPEVLERLYKGIRNSAPGLSVLHMDNA HHHHCCCCEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCC NPITLATYPEESEQILKTIVKFHTPGDVAAFGMETADPAVVAANSLKATSEEVFEAIRLV CCEEEEECCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCEEEECCCCCHHHHHHHHHHHH NRFGAVRGANGLPEILPGINFVHGLMGETKKTFQLNYAFLQKVLDSGLLLRRINIRQVMA HHHCCCCCCCCCHHHHCCHHHHHHHHCCCCHHEEECHHHHHHHHHCCCEEEECCHHHHEE FPGTPMYGRDEAAKKHKKLFLDYKERVRKNIDLPMLRKVVPEGTVLRDVMCEVHDREITF CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHCCCEEEE GRQIGSYPLLVGIPSLLPLRKFTDITVTGHGMRSITGIPYPLHINSASLTLIRCLPGIGK CHHCCCCCCEEECCCHHCHHHCCEEEEECCCCHHCCCCCCEEEECCCHHHHHHHCCCCCH KAAASIAAGVPYSNRDDFLKRVSEGEKVIDFIEI HHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]