| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226318
Identifier: 21226318
GI number: 21226318
Start: 293965
End: 294780
Strand: Reverse
Name: 21226318
Synonym: MM_0216
Alternate gene names: NA
Gene position: 294780-293965 (Counterclockwise)
Preceding gene: 21226319
Following gene: 21226317
Centisome position: 7.2
GC content: 43.14
Gene sequence:
>816_bases ATGACCATCAAGGACAAACACTTAAGAACTTTAGTGTGCCTGGTTATCCTGGTACTGGGTATATCCCTTATTCCGGCTGC ATCTGCCAGCGATATTCCTTCTATCCCCAACGTATTCCAAGGAAAATTGATCACAGAAGGCGCAGATGTACCTGAAGGAA CTATAATCTCAGCTTATATAGATTCAAAGCTTGTTGGCTTGAAAACTATAGAGACAGAAGGTGAGTATCAGTTAGATGTA TCAGGTACAGAAGAGGACAACGGGAAAAAAATAGTTTTCAAGCTGGGTCTTGTGGAATCTCCCGTTTCTGCAACATATCA GCATGGAGCTTCCCCGGTTACGCTTGACCTTCCTTTCAAGGGGGATTTTGTGCCTCCGGTTATAGAGAGCTGCTATGCAT CTCCTGTTTATATCCTGAACGACGGGAAGGATTACTCAACTGTCAATGCAAAAGTTTCGGATGAGCTGTCCGGAGTTATG TCAGTAACCCTCGATCTTACCCCCATAGGTGGAGGAGTAGTATCAATGACACCTGAAAAAGGAGGCATTTATACCTGCAA TGTGGACAGCACTCAGGCAGGAGAATTTAAATTCACCCTTACAGCAACGGATTACTTCGGTAATAAAATTACAGATTCTA ATAGCATCTCGATCACTGCAGTTAAAGAAAATGAGCTTATAGCAAAGTTCGGAGGGGCTGACAGCAGCTTCTCTGCCGAA GAAATCAAAAATATTGTAAGTGACGGTAAAATCTCCAGCGCGGTCAAATATGCAATTCTGAACATTTACTATGCTGACGG GTGGGATAGGATATGA
Upstream 100 bases:
>100_bases CTCACTTTCGGGTCAAAGCTCTGGAGGGACTCGAAAAGGAAGCCCTGAAGGATTTTCCTTAATGGGTTTTTCGGATACGT AAAAACCTCAAGGTGATATG
Downstream 100 bases:
>100_bases GGCAGCCTGAGTTTAAAATTGCGTTTGCGTTACTCATGGCTTTGATTTTATGTGCAGTTCCGGCTTCTGCAGGCAGTGCA GAAAGGGTTCTTCCGTCTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 271; Mature: 270
Protein sequence:
>271_residues MTIKDKHLRTLVCLVILVLGISLIPAASASDIPSIPNVFQGKLITEGADVPEGTIISAYIDSKLVGLKTIETEGEYQLDV SGTEEDNGKKIVFKLGLVESPVSATYQHGASPVTLDLPFKGDFVPPVIESCYASPVYILNDGKDYSTVNAKVSDELSGVM SVTLDLTPIGGGVVSMTPEKGGIYTCNVDSTQAGEFKFTLTATDYFGNKITDSNSISITAVKENELIAKFGGADSSFSAE EIKNIVSDGKISSAVKYAILNIYYADGWDRI
Sequences:
>Translated_271_residues MTIKDKHLRTLVCLVILVLGISLIPAASASDIPSIPNVFQGKLITEGADVPEGTIISAYIDSKLVGLKTIETEGEYQLDV SGTEEDNGKKIVFKLGLVESPVSATYQHGASPVTLDLPFKGDFVPPVIESCYASPVYILNDGKDYSTVNAKVSDELSGVM SVTLDLTPIGGGVVSMTPEKGGIYTCNVDSTQAGEFKFTLTATDYFGNKITDSNSISITAVKENELIAKFGGADSSFSAE EIKNIVSDGKISSAVKYAILNIYYADGWDRI >Mature_270_residues TIKDKHLRTLVCLVILVLGISLIPAASASDIPSIPNVFQGKLITEGADVPEGTIISAYIDSKLVGLKTIETEGEYQLDVS GTEEDNGKKIVFKLGLVESPVSATYQHGASPVTLDLPFKGDFVPPVIESCYASPVYILNDGKDYSTVNAKVSDELSGVMS VTLDLTPIGGGVVSMTPEKGGIYTCNVDSTQAGEFKFTLTATDYFGNKITDSNSISITAVKENELIAKFGGADSSFSAEE IKNIVSDGKISSAVKYAILNIYYADGWDRI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28840; Mature: 28709
Theoretical pI: Translated: 4.29; Mature: 4.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIKDKHLRTLVCLVILVLGISLIPAASASDIPSIPNVFQGKLITEGADVPEGTIISAYI CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCEEEECCCCCCCCCEEEEEE DSKLVGLKTIETEGEYQLDVSGTEEDNGKKIVFKLGLVESPVSATYQHGASPVTLDLPFK CCEEEEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCEEEECCCC GDFVPPVIESCYASPVYILNDGKDYSTVNAKVSDELSGVMSVTLDLTPIGGGVVSMTPEK CCCCCHHHHHHCCCCEEEEECCCCCEEEECCHHHHHCCEEEEEEEEEECCCCEEEECCCC GGIYTCNVDSTQAGEFKFTLTATDYFGNKITDSNSISITAVKENELIAKFGGADSSFSAE CCEEEEECCCCCCCEEEEEEEEECCCCCEECCCCCEEEEEEECCCEEEEECCCCCCCCHH EIKNIVSDGKISSAVKYAILNIYYADGWDRI HHHHHHCCCCHHHHHEEEEEEEEEECCCCCC >Mature Secondary Structure TIKDKHLRTLVCLVILVLGISLIPAASASDIPSIPNVFQGKLITEGADVPEGTIISAYI CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCEEEECCCCCCCCCEEEEEE DSKLVGLKTIETEGEYQLDVSGTEEDNGKKIVFKLGLVESPVSATYQHGASPVTLDLPFK CCEEEEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCEEEECCCC GDFVPPVIESCYASPVYILNDGKDYSTVNAKVSDELSGVMSVTLDLTPIGGGVVSMTPEK CCCCCHHHHHHCCCCEEEEECCCCCEEEECCHHHHHCCEEEEEEEEEECCCCEEEECCCC GGIYTCNVDSTQAGEFKFTLTATDYFGNKITDSNSISITAVKENELIAKFGGADSSFSAE CCEEEEECCCCCCCEEEEEEEEECCCCCEECCCCCEEEEEEECCCEEEEECCCCCCCCHH EIKNIVSDGKISSAVKYAILNIYYADGWDRI HHHHHHCCCCHHHHHEEEEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA