Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

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The map label for this gene is ywhL [H]

Identifier: 21226316

GI number: 21226316

Start: 290422

End: 291807

Strand: Reverse

Name: ywhL [H]

Synonym: MM_0214

Alternate gene names: 21226316

Gene position: 291807-290422 (Counterclockwise)

Preceding gene: 21226317

Following gene: 21226315

Centisome position: 7.12

GC content: 44.37

Gene sequence:

>1386_bases
TTGAAAGAAACAACATATGATAAAATATCCGGAGGGCATGTCCTCATAATCATTTTAGGGATAACTGTGCTGGCTTTTTT
AATGCTGGCGAGTGTCGCAGGCGCAGTGCCATTTGCATATATTACGAACTACGACGACAACACTACTTCTGTAATTGATA
TAGCAACAAACACTGTTACCTCCACGGTACCCGTAGGCATTCGACCTTGTGGAGTTGCGGTCAGTCCGGATGGAACTAAG
GTATATGTGGCTAACGATGACAGCAATAATATCTCTGTAATTGATGCAACAACCAGCACTGTTACCTCCACGGTGCCTGT
GGGACATGCTCCTTATGGAGTTGCAGTAAGTCCGGATGGAACAAAGGTATATGTGGCGAACCAAAACGACAGCAGTGTCT
CTGTAATTAACACAACGACCAGCACTGTTATCGCCAGTGTTCCAGTAGATTACAGTCCTTCTGGAGTTGTAGTCAGTCCG
GATGGAACAAAGGTATATGTGGCGAACTACGGCAGTAACACTACTTCCGTAATCGATACGTCTAATTACAGTATTACCTT
CACGGTGCCTGTAGGAATTGCTCCTTATGGAGTTGCGATCAGTCCGGATGGAACAAAGGTATATGTGGCGAACTATGGCA
GCAATACTACTTCTGTAATTGATACAGCCACAAACAACGTTATAGCCTCTGTGCCCGTAGGATGGAGTCCGGTTGGAGTT
ACAATTGCACCTGATGGAACAAAAGTATATGTGGCTAACCTGGGTAGCTCCAATGTCTCTATTATTGACACCGCTACAAA
CACAGTTACAGACTCTGTGAATGTAGGAATCGCTCCTTGTGGAGTTGCAGTTACCCCGGATGGATCAAAGTTATACGTAA
CGAACGCCGGTGACAACACTACTTCTGTAATTGACACCATAACCAACAACGTTACAGTCACTGTGGCTGTGGGAAAAACG
CCCATCACCCTGGGTCAGTTTATAGGGGGACCAGTAACAGCAAGCAACACCAGTAGAGACACAGAAACCGATTGTAAGGG
GATAGAAGATTATGTCCCAGATTATGCAGGTGGCGCTGTTATTCATATAAAAAATAGGGTTGGAAATGATATCGTCGTAT
CCTGGGCAAAGGAAGGTTCCCAAAAAGCTGTTTTCCAGGTGAATATTCCTGCAGGGCAAACGCGCACAGTCACAGCCCCT
TCGGGTTCTTATGAAGAATATATCCGAGCAGGATGTTCATGGTATATAGTAACCGATGGGCATATTGTTGTGGAATCTGG
TTATGAATACAGCCTGGAATACTATACGGTTGTAGATAACAATACTATAGTATATGATGGAACTGGATTTAAACAAATAC
CTGATAGTCAAGCCCCGAAAATCTGA

Upstream 100 bases:

>100_bases
CTCTTTTTTTTAATTATTAAATATAAGGAAAATTTATTCGACTGAATTTATATCTCTTCCAATTATCTAAATATAAAGGC
CCTATATGTGGAGGCTTAAA

Downstream 100 bases:

>100_bases
CCAGCTTCAATTACAGGGTTACAGGGTAAGCGCGTAGGGTCACGATGCCCTTCCATTCATGAGGCTGCCCGACAATTACT
GCCAGTAAAAACTTAATTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
MKETTYDKISGGHVLIIILGITVLAFLMLASVAGAVPFAYITNYDDNTTSVIDIATNTVTSTVPVGIRPCGVAVSPDGTK
VYVANDDSNNISVIDATTSTVTSTVPVGHAPYGVAVSPDGTKVYVANQNDSSVSVINTTTSTVIASVPVDYSPSGVVVSP
DGTKVYVANYGSNTTSVIDTSNYSITFTVPVGIAPYGVAISPDGTKVYVANYGSNTTSVIDTATNNVIASVPVGWSPVGV
TIAPDGTKVYVANLGSSNVSIIDTATNTVTDSVNVGIAPCGVAVTPDGSKLYVTNAGDNTTSVIDTITNNVTVTVAVGKT
PITLGQFIGGPVTASNTSRDTETDCKGIEDYVPDYAGGAVIHIKNRVGNDIVVSWAKEGSQKAVFQVNIPAGQTRTVTAP
SGSYEEYIRAGCSWYIVTDGHIVVESGYEYSLEYYTVVDNNTIVYDGTGFKQIPDSQAPKI

Sequences:

>Translated_461_residues
MKETTYDKISGGHVLIIILGITVLAFLMLASVAGAVPFAYITNYDDNTTSVIDIATNTVTSTVPVGIRPCGVAVSPDGTK
VYVANDDSNNISVIDATTSTVTSTVPVGHAPYGVAVSPDGTKVYVANQNDSSVSVINTTTSTVIASVPVDYSPSGVVVSP
DGTKVYVANYGSNTTSVIDTSNYSITFTVPVGIAPYGVAISPDGTKVYVANYGSNTTSVIDTATNNVIASVPVGWSPVGV
TIAPDGTKVYVANLGSSNVSIIDTATNTVTDSVNVGIAPCGVAVTPDGSKLYVTNAGDNTTSVIDTITNNVTVTVAVGKT
PITLGQFIGGPVTASNTSRDTETDCKGIEDYVPDYAGGAVIHIKNRVGNDIVVSWAKEGSQKAVFQVNIPAGQTRTVTAP
SGSYEEYIRAGCSWYIVTDGHIVVESGYEYSLEYYTVVDNNTIVYDGTGFKQIPDSQAPKI
>Mature_461_residues
MKETTYDKISGGHVLIIILGITVLAFLMLASVAGAVPFAYITNYDDNTTSVIDIATNTVTSTVPVGIRPCGVAVSPDGTK
VYVANDDSNNISVIDATTSTVTSTVPVGHAPYGVAVSPDGTKVYVANQNDSSVSVINTTTSTVIASVPVDYSPSGVVVSP
DGTKVYVANYGSNTTSVIDTSNYSITFTVPVGIAPYGVAISPDGTKVYVANYGSNTTSVIDTATNNVIASVPVGWSPVGV
TIAPDGTKVYVANLGSSNVSIIDTATNTVTDSVNVGIAPCGVAVTPDGSKLYVTNAGDNTTSVIDTITNNVTVTVAVGKT
PITLGQFIGGPVTASNTSRDTETDCKGIEDYVPDYAGGAVIHIKNRVGNDIVVSWAKEGSQKAVFQVNIPAGQTRTVTAP
SGSYEEYIRAGCSWYIVTDGHIVVESGYEYSLEYYTVVDNNTIVYDGTGFKQIPDSQAPKI

Specific function: Unknown

COG id: COG3391

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011045
- InterPro:   IPR015943
- InterPro:   IPR011964 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47722; Mature: 47722

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKETTYDKISGGHVLIIILGITVLAFLMLASVAGAVPFAYITNYDDNTTSVIDIATNTVT
CCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEECCEE
STVPVGIRPCGVAVSPDGTKVYVANDDSNNISVIDATTSTVTSTVPVGHAPYGVAVSPDG
EEECCCEEECCEEECCCCCEEEEEECCCCCEEEEEECCCCEEEECCCCCCCCEEEECCCC
TKVYVANQNDSSVSVINTTTSTVIASVPVDYSPSGVVVSPDGTKVYVANYGSNTTSVIDT
CEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEEC
SNYSITFTVPVGIAPYGVAISPDGTKVYVANYGSNTTSVIDTATNNVIASVPVGWSPVGV
CCEEEEEEEECCCCCCCEEECCCCCEEEEEECCCCCEEEEEECCCCEEEECCCCCCCEEE
TIAPDGTKVYVANLGSSNVSIIDTATNTVTDSVNVGIAPCGVAVTPDGSKLYVTNAGDNT
EECCCCCEEEEEECCCCCEEEEECCCCEEECCCCCCEECCCEEECCCCCEEEEECCCCCC
TSVIDTITNNVTVTVAVGKTPITLGQFIGGPVTASNTSRDTETDCKGIEDYVPDYAGGAV
HHHHEECCCCEEEEEEECCCCEEHHHHCCCCEECCCCCCCCCCCCCCHHHHCCCCCCCEE
IHIKNRVGNDIVVSWAKEGSQKAVFQVNIPAGQTRTVTAPSGSYEEYIRAGCSWYIVTDG
EEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCHHHHHHCCCEEEEEECC
HIVVESGYEYSLEYYTVVDNNTIVYDGTGFKQIPDSQAPKI
EEEEECCCEEEEEEEEEEECCEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKETTYDKISGGHVLIIILGITVLAFLMLASVAGAVPFAYITNYDDNTTSVIDIATNTVT
CCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEECCEE
STVPVGIRPCGVAVSPDGTKVYVANDDSNNISVIDATTSTVTSTVPVGHAPYGVAVSPDG
EEECCCEEECCEEECCCCCEEEEEECCCCCEEEEEECCCCEEEECCCCCCCCEEEECCCC
TKVYVANQNDSSVSVINTTTSTVIASVPVDYSPSGVVVSPDGTKVYVANYGSNTTSVIDT
CEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEEC
SNYSITFTVPVGIAPYGVAISPDGTKVYVANYGSNTTSVIDTATNNVIASVPVGWSPVGV
CCEEEEEEEECCCCCCCEEECCCCCEEEEEECCCCCEEEEEECCCCEEEECCCCCCCEEE
TIAPDGTKVYVANLGSSNVSIIDTATNTVTDSVNVGIAPCGVAVTPDGSKLYVTNAGDNT
EECCCCCEEEEEECCCCCEEEEECCCCEEECCCCCCEECCCEEECCCCCEEEEECCCCCC
TSVIDTITNNVTVTVAVGKTPITLGQFIGGPVTASNTSRDTETDCKGIEDYVPDYAGGAV
HHHHEECCCCEEEEEEECCCCEEHHHHCCCCEECCCCCCCCCCCCCCHHHHCCCCCCCEE
IHIKNRVGNDIVVSWAKEGSQKAVFQVNIPAGQTRTVTAPSGSYEEYIRAGCSWYIVTDG
EEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCHHHHHHCCCEEEEEECC
HIVVESGYEYSLEYYTVVDNNTIVYDGTGFKQIPDSQAPKI
EEEEECCCEEEEEEEEEEECCEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]