| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is ywhL [H]
Identifier: 21226316
GI number: 21226316
Start: 290422
End: 291807
Strand: Reverse
Name: ywhL [H]
Synonym: MM_0214
Alternate gene names: 21226316
Gene position: 291807-290422 (Counterclockwise)
Preceding gene: 21226317
Following gene: 21226315
Centisome position: 7.12
GC content: 44.37
Gene sequence:
>1386_bases TTGAAAGAAACAACATATGATAAAATATCCGGAGGGCATGTCCTCATAATCATTTTAGGGATAACTGTGCTGGCTTTTTT AATGCTGGCGAGTGTCGCAGGCGCAGTGCCATTTGCATATATTACGAACTACGACGACAACACTACTTCTGTAATTGATA TAGCAACAAACACTGTTACCTCCACGGTACCCGTAGGCATTCGACCTTGTGGAGTTGCGGTCAGTCCGGATGGAACTAAG GTATATGTGGCTAACGATGACAGCAATAATATCTCTGTAATTGATGCAACAACCAGCACTGTTACCTCCACGGTGCCTGT GGGACATGCTCCTTATGGAGTTGCAGTAAGTCCGGATGGAACAAAGGTATATGTGGCGAACCAAAACGACAGCAGTGTCT CTGTAATTAACACAACGACCAGCACTGTTATCGCCAGTGTTCCAGTAGATTACAGTCCTTCTGGAGTTGTAGTCAGTCCG GATGGAACAAAGGTATATGTGGCGAACTACGGCAGTAACACTACTTCCGTAATCGATACGTCTAATTACAGTATTACCTT CACGGTGCCTGTAGGAATTGCTCCTTATGGAGTTGCGATCAGTCCGGATGGAACAAAGGTATATGTGGCGAACTATGGCA GCAATACTACTTCTGTAATTGATACAGCCACAAACAACGTTATAGCCTCTGTGCCCGTAGGATGGAGTCCGGTTGGAGTT ACAATTGCACCTGATGGAACAAAAGTATATGTGGCTAACCTGGGTAGCTCCAATGTCTCTATTATTGACACCGCTACAAA CACAGTTACAGACTCTGTGAATGTAGGAATCGCTCCTTGTGGAGTTGCAGTTACCCCGGATGGATCAAAGTTATACGTAA CGAACGCCGGTGACAACACTACTTCTGTAATTGACACCATAACCAACAACGTTACAGTCACTGTGGCTGTGGGAAAAACG CCCATCACCCTGGGTCAGTTTATAGGGGGACCAGTAACAGCAAGCAACACCAGTAGAGACACAGAAACCGATTGTAAGGG GATAGAAGATTATGTCCCAGATTATGCAGGTGGCGCTGTTATTCATATAAAAAATAGGGTTGGAAATGATATCGTCGTAT CCTGGGCAAAGGAAGGTTCCCAAAAAGCTGTTTTCCAGGTGAATATTCCTGCAGGGCAAACGCGCACAGTCACAGCCCCT TCGGGTTCTTATGAAGAATATATCCGAGCAGGATGTTCATGGTATATAGTAACCGATGGGCATATTGTTGTGGAATCTGG TTATGAATACAGCCTGGAATACTATACGGTTGTAGATAACAATACTATAGTATATGATGGAACTGGATTTAAACAAATAC CTGATAGTCAAGCCCCGAAAATCTGA
Upstream 100 bases:
>100_bases CTCTTTTTTTTAATTATTAAATATAAGGAAAATTTATTCGACTGAATTTATATCTCTTCCAATTATCTAAATATAAAGGC CCTATATGTGGAGGCTTAAA
Downstream 100 bases:
>100_bases CCAGCTTCAATTACAGGGTTACAGGGTAAGCGCGTAGGGTCACGATGCCCTTCCATTCATGAGGCTGCCCGACAATTACT GCCAGTAAAAACTTAATTCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 461; Mature: 461
Protein sequence:
>461_residues MKETTYDKISGGHVLIIILGITVLAFLMLASVAGAVPFAYITNYDDNTTSVIDIATNTVTSTVPVGIRPCGVAVSPDGTK VYVANDDSNNISVIDATTSTVTSTVPVGHAPYGVAVSPDGTKVYVANQNDSSVSVINTTTSTVIASVPVDYSPSGVVVSP DGTKVYVANYGSNTTSVIDTSNYSITFTVPVGIAPYGVAISPDGTKVYVANYGSNTTSVIDTATNNVIASVPVGWSPVGV TIAPDGTKVYVANLGSSNVSIIDTATNTVTDSVNVGIAPCGVAVTPDGSKLYVTNAGDNTTSVIDTITNNVTVTVAVGKT PITLGQFIGGPVTASNTSRDTETDCKGIEDYVPDYAGGAVIHIKNRVGNDIVVSWAKEGSQKAVFQVNIPAGQTRTVTAP SGSYEEYIRAGCSWYIVTDGHIVVESGYEYSLEYYTVVDNNTIVYDGTGFKQIPDSQAPKI
Sequences:
>Translated_461_residues MKETTYDKISGGHVLIIILGITVLAFLMLASVAGAVPFAYITNYDDNTTSVIDIATNTVTSTVPVGIRPCGVAVSPDGTK VYVANDDSNNISVIDATTSTVTSTVPVGHAPYGVAVSPDGTKVYVANQNDSSVSVINTTTSTVIASVPVDYSPSGVVVSP DGTKVYVANYGSNTTSVIDTSNYSITFTVPVGIAPYGVAISPDGTKVYVANYGSNTTSVIDTATNNVIASVPVGWSPVGV TIAPDGTKVYVANLGSSNVSIIDTATNTVTDSVNVGIAPCGVAVTPDGSKLYVTNAGDNTTSVIDTITNNVTVTVAVGKT PITLGQFIGGPVTASNTSRDTETDCKGIEDYVPDYAGGAVIHIKNRVGNDIVVSWAKEGSQKAVFQVNIPAGQTRTVTAP SGSYEEYIRAGCSWYIVTDGHIVVESGYEYSLEYYTVVDNNTIVYDGTGFKQIPDSQAPKI >Mature_461_residues MKETTYDKISGGHVLIIILGITVLAFLMLASVAGAVPFAYITNYDDNTTSVIDIATNTVTSTVPVGIRPCGVAVSPDGTK VYVANDDSNNISVIDATTSTVTSTVPVGHAPYGVAVSPDGTKVYVANQNDSSVSVINTTTSTVIASVPVDYSPSGVVVSP DGTKVYVANYGSNTTSVIDTSNYSITFTVPVGIAPYGVAISPDGTKVYVANYGSNTTSVIDTATNNVIASVPVGWSPVGV TIAPDGTKVYVANLGSSNVSIIDTATNTVTDSVNVGIAPCGVAVTPDGSKLYVTNAGDNTTSVIDTITNNVTVTVAVGKT PITLGQFIGGPVTASNTSRDTETDCKGIEDYVPDYAGGAVIHIKNRVGNDIVVSWAKEGSQKAVFQVNIPAGQTRTVTAP SGSYEEYIRAGCSWYIVTDGHIVVESGYEYSLEYYTVVDNNTIVYDGTGFKQIPDSQAPKI
Specific function: Unknown
COG id: COG3391
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011045 - InterPro: IPR015943 - InterPro: IPR011964 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47722; Mature: 47722
Theoretical pI: Translated: 4.16; Mature: 4.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKETTYDKISGGHVLIIILGITVLAFLMLASVAGAVPFAYITNYDDNTTSVIDIATNTVT CCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEECCEE STVPVGIRPCGVAVSPDGTKVYVANDDSNNISVIDATTSTVTSTVPVGHAPYGVAVSPDG EEECCCEEECCEEECCCCCEEEEEECCCCCEEEEEECCCCEEEECCCCCCCCEEEECCCC TKVYVANQNDSSVSVINTTTSTVIASVPVDYSPSGVVVSPDGTKVYVANYGSNTTSVIDT CEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEEC SNYSITFTVPVGIAPYGVAISPDGTKVYVANYGSNTTSVIDTATNNVIASVPVGWSPVGV CCEEEEEEEECCCCCCCEEECCCCCEEEEEECCCCCEEEEEECCCCEEEECCCCCCCEEE TIAPDGTKVYVANLGSSNVSIIDTATNTVTDSVNVGIAPCGVAVTPDGSKLYVTNAGDNT EECCCCCEEEEEECCCCCEEEEECCCCEEECCCCCCEECCCEEECCCCCEEEEECCCCCC TSVIDTITNNVTVTVAVGKTPITLGQFIGGPVTASNTSRDTETDCKGIEDYVPDYAGGAV HHHHEECCCCEEEEEEECCCCEEHHHHCCCCEECCCCCCCCCCCCCCHHHHCCCCCCCEE IHIKNRVGNDIVVSWAKEGSQKAVFQVNIPAGQTRTVTAPSGSYEEYIRAGCSWYIVTDG EEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCHHHHHHCCCEEEEEECC HIVVESGYEYSLEYYTVVDNNTIVYDGTGFKQIPDSQAPKI EEEEECCCEEEEEEEEEEECCEEEECCCCCCCCCCCCCCCC >Mature Secondary Structure MKETTYDKISGGHVLIIILGITVLAFLMLASVAGAVPFAYITNYDDNTTSVIDIATNTVT CCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEECCEE STVPVGIRPCGVAVSPDGTKVYVANDDSNNISVIDATTSTVTSTVPVGHAPYGVAVSPDG EEECCCEEECCEEECCCCCEEEEEECCCCCEEEEEECCCCEEEECCCCCCCCEEEECCCC TKVYVANQNDSSVSVINTTTSTVIASVPVDYSPSGVVVSPDGTKVYVANYGSNTTSVIDT CEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEEC SNYSITFTVPVGIAPYGVAISPDGTKVYVANYGSNTTSVIDTATNNVIASVPVGWSPVGV CCEEEEEEEECCCCCCCEEECCCCCEEEEEECCCCCEEEEEECCCCEEEECCCCCCCEEE TIAPDGTKVYVANLGSSNVSIIDTATNTVTDSVNVGIAPCGVAVTPDGSKLYVTNAGDNT EECCCCCEEEEEECCCCCEEEEECCCCEEECCCCCCEECCCEEECCCCCEEEEECCCCCC TSVIDTITNNVTVTVAVGKTPITLGQFIGGPVTASNTSRDTETDCKGIEDYVPDYAGGAV HHHHEECCCCEEEEEEECCCCEEHHHHCCCCEECCCCCCCCCCCCCCHHHHCCCCCCCEE IHIKNRVGNDIVVSWAKEGSQKAVFQVNIPAGQTRTVTAPSGSYEEYIRAGCSWYIVTDG EEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCHHHHHHCCCEEEEEECC HIVVESGYEYSLEYYTVVDNNTIVYDGTGFKQIPDSQAPKI EEEEECCCEEEEEEEEEEECCEEEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377 [H]