Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
---|---|
Accession | NC_003901 |
Length | 4,096,345 |
Click here to switch to the map view.
The map label for this gene is czcD [C]
Identifier: 21226269
GI number: 21226269
Start: 217859
End: 218950
Strand: Direct
Name: czcD [C]
Synonym: MM_0167
Alternate gene names: 21226269
Gene position: 217859-218950 (Clockwise)
Preceding gene: 21226268
Following gene: 21226275
Centisome position: 5.32
GC content: 47.44
Gene sequence:
>1092_bases ATGTCAGAAAAGCATTCCAATTATCATTCACACGGGAAGAAGGAAAGTTCCGAACAGTCACATAAGAGTTATGAGCACGC CTGTACTCATTCCAGAACTCACTCCCACAGGCACAGTCATACTCACGGAGCTGTAGATCCTTCAATAACTGCTACCAGCA GAGGGCTCTGGGCTGTCAAATGGTCTTTCATAGGGCTTATGGTCACAGCCGTCCTGCAGATTTTCATTGTGTATGTCTCG GGCAGTGTTGCCCTTCTTGCTGATACCATCCATAACTTCGGAGACGCATCAACAGCAATCCCCCTTGCAATAGCTTTTTC CCTCGCAAAAAGGAAGCCGAGCAAAAGCTTTTCTTACGGATACGGCAGGGTAGAAGATCTTGCAGGTGTAATCATTGTTT TTCTGATCCTTTTCAGCGCAGCAGTTGCAGGCTATGAGTCCGTAACCCGCTTTTTAAATCCCCAGCCCGTAGATCATTTG GAAGCTGTAGCTCTTGCAGCAATCATAGGCTGTATCGGAAACGAAGTTGTTGCCGAATTCCGCATGAAAGTTGGAAAAGA AATCGGGAGTGCAGCCCTTGTCGCAGATGGATATCATGCCAGGGTGGACGGCTTTACCAGCCTTGCTGTCCTGTTAGGGG CAATCGGTGTGTGGTCAGGATTTCCGGTCCTTGACCCTCTTATAGGCATGCTGATAACAATAACCATTCTCAAAATAGTT CTTGATTCCAGTAAACTCGTATTTACTCGCCTGCTTGACGGCGTTGAGCCTGAAATTATCGACAGGGTAAAAAATATTGC TGAAAGCGTTGAAGGTGTCTGTGAAGTAACAGACCTCAGGGTGCGCTGGATAGGGCACAGGCTCCATGCAGAGATCAAGG CATCCGTTTCCTCTTCACTTTCCGTTGAAGAGGGGCACGAAATTGCCAGCGCAGTGGAAAAAAAGCTTCTGGAGAATTTT TCCTATCTTTCCTACACCACTATCCGCGTAGACCCCCTGAAAGCCTCAGGGGAATGCTGTCACAGCGGGACCGAAAATCC AGATATGCAACATGGAAAACAAACACACGTTGTAAATGTCTATCCTCAATGA
Upstream 100 bases:
>100_bases AATTAAATCTTCTTCTATGAATTTCAGATGAGCATATAATAGTCAATAGAGTATCCGATAAAAAAATTGTTTTAAAAAAT CTTATTGATCTGGAGTAATC
Downstream 100 bases:
>100_bases GTCCAGATAGTTGGTTTCATCAAACCTTTATAGGATTTCCACAACTGAACTGAAAAAAGGGCTTTATATTTCTTTTTAGG GATCATTGCTTAAGTATATC
Product: cobalt-zinc-cadmium resistance protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 363; Mature: 362
Protein sequence:
>363_residues MSEKHSNYHSHGKKESSEQSHKSYEHACTHSRTHSHRHSHTHGAVDPSITATSRGLWAVKWSFIGLMVTAVLQIFIVYVS GSVALLADTIHNFGDASTAIPLAIAFSLAKRKPSKSFSYGYGRVEDLAGVIIVFLILFSAAVAGYESVTRFLNPQPVDHL EAVALAAIIGCIGNEVVAEFRMKVGKEIGSAALVADGYHARVDGFTSLAVLLGAIGVWSGFPVLDPLIGMLITITILKIV LDSSKLVFTRLLDGVEPEIIDRVKNIAESVEGVCEVTDLRVRWIGHRLHAEIKASVSSSLSVEEGHEIASAVEKKLLENF SYLSYTTIRVDPLKASGECCHSGTENPDMQHGKQTHVVNVYPQ
Sequences:
>Translated_363_residues MSEKHSNYHSHGKKESSEQSHKSYEHACTHSRTHSHRHSHTHGAVDPSITATSRGLWAVKWSFIGLMVTAVLQIFIVYVS GSVALLADTIHNFGDASTAIPLAIAFSLAKRKPSKSFSYGYGRVEDLAGVIIVFLILFSAAVAGYESVTRFLNPQPVDHL EAVALAAIIGCIGNEVVAEFRMKVGKEIGSAALVADGYHARVDGFTSLAVLLGAIGVWSGFPVLDPLIGMLITITILKIV LDSSKLVFTRLLDGVEPEIIDRVKNIAESVEGVCEVTDLRVRWIGHRLHAEIKASVSSSLSVEEGHEIASAVEKKLLENF SYLSYTTIRVDPLKASGECCHSGTENPDMQHGKQTHVVNVYPQ >Mature_362_residues SEKHSNYHSHGKKESSEQSHKSYEHACTHSRTHSHRHSHTHGAVDPSITATSRGLWAVKWSFIGLMVTAVLQIFIVYVSG SVALLADTIHNFGDASTAIPLAIAFSLAKRKPSKSFSYGYGRVEDLAGVIIVFLILFSAAVAGYESVTRFLNPQPVDHLE AVALAAIIGCIGNEVVAEFRMKVGKEIGSAALVADGYHARVDGFTSLAVLLGAIGVWSGFPVLDPLIGMLITITILKIVL DSSKLVFTRLLDGVEPEIIDRVKNIAESVEGVCEVTDLRVRWIGHRLHAEIKASVSSSLSVEEGHEIASAVEKKLLENFS YLSYTTIRVDPLKASGECCHSGTENPDMQHGKQTHVVNVYPQ
Specific function: Unknown
COG id: COG0053
COG function: function code P; Predicted Co/Zn/Cd cation transporters
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family [H]
Homologues:
Organism=Escherichia coli, GI1790349, Length=256, Percent_Identity=26.953125, Blast_Score=75, Evalue=6e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002524 [H]
Pfam domain/function: PF01545 Cation_efflux [H]
EC number: NA
Molecular weight: Translated: 39407; Mature: 39275
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEKHSNYHSHGKKESSEQSHKSYEHACTHSRTHSHRHSHTHGAVDPSITATSRGLWAVK CCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHH WSFIGLMVTAVLQIFIVYVSGSVALLADTIHNFGDASTAIPLAIAFSLAKRKPSKSFSYG HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC YGRVEDLAGVIIVFLILFSAAVAGYESVTRFLNPQPVDHLEAVALAAIIGCIGNEVVAEF CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH RMKVGKEIGSAALVADGYHARVDGFTSLAVLLGAIGVWSGFPVLDPLIGMLITITILKIV HHHHHHHHCCHHEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH LDSSKLVFTRLLDGVEPEIIDRVKNIAESVEGVCEVTDLRVRWIGHRLHAEIKASVSSSL HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SVEEGHEIASAVEKKLLENFSYLSYTTIRVDPLKASGECCHSGTENPDMQHGKQTHVVNV CHHHHHHHHHHHHHHHHHCCCHHEEEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCEEEE YPQ CCC >Mature Secondary Structure SEKHSNYHSHGKKESSEQSHKSYEHACTHSRTHSHRHSHTHGAVDPSITATSRGLWAVK CCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHH WSFIGLMVTAVLQIFIVYVSGSVALLADTIHNFGDASTAIPLAIAFSLAKRKPSKSFSYG HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC YGRVEDLAGVIIVFLILFSAAVAGYESVTRFLNPQPVDHLEAVALAAIIGCIGNEVVAEF CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH RMKVGKEIGSAALVADGYHARVDGFTSLAVLLGAIGVWSGFPVLDPLIGMLITITILKIV HHHHHHHHCCHHEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH LDSSKLVFTRLLDGVEPEIIDRVKNIAESVEGVCEVTDLRVRWIGHRLHAEIKASVSSSL HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SVEEGHEIASAVEKKLLENFSYLSYTTIRVDPLKASGECCHSGTENPDMQHGKQTHVVNV CHHHHHHHHHHHHHHHHHCCCHHEEEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCEEEE YPQ CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]