Click here to switch to the map view.

The map label for this gene is xp55 [H]

Identifier: 21226104

GI number: 21226104

Start: 2677

End: 4284

Strand: Direct

Name: xp55 [H]

Synonym: MM_0002

Alternate gene names: 21226104

Gene position: 2677-4284 (Clockwise)

Preceding gene: 21226103

Following gene: 21226105

Centisome position: 0.07

GC content: 44.53

Gene sequence:

>1608_bases
ATGGATGATTCCGAACTGGGTTCTGCATCAGGCTCAGAGTCAGGTTCTGTATCAGCCAGCTCGACTTCCAGGGCTTCCGA
TGAACTGGTAGTAAATGTGTATTCGCATACAGGAGAACCGGAAACAGGGTTTGACCCTCTTCTGGGATGGGGATGCGGTC
ATGTGAATTTTGAGCCATTAATACAGAGTACTCTTTTCAAAACAGATGATGAAGGCGCTATCATAAATGACCTTGCTACA
GGTTATTCTGCCAGTCCTGACGGGAAGACATGGACTGTAAATGTAAGAGATGATGTCAAATTCACGGACGGAGAGAAGCT
AACAGCTGAAGACGTTGCATTTACATTCAATACTGCAATTGGAAGCAATTCCGAACTCGACATGAGTAACCTTGAAAACG
CCAGGGCAGTGAATGACACTGCAGTTGAATTCAATTTAAAAGAGCCCCAGTCCAGTTTCATATGGAGACTCAGGTATGTT
GGGATTGTGCCTGAGCATGCCTATAAAAAAGAAACCTATGGAGCCAGCCCGATCGGTTCAGGCCCGTACAAACTGGTACA
GTGGGACAAAGGACAACAGGCTATCTTTGAGCTTAATGATAATTACTATGGACAGAAGCCGTACTTCAAAAAAATAACCA
TGTTATTCCTGGACAGGGATACTGCATTTGCAGCTGCAAAGTCCGGCAATGTTGACATAGCTGAAATCGATATTACCCAT
GCAAACCAGTCCATAAACGGCTATGATATAATCTCGCTTCCTTCCTCAAGGGCATTCGGAGTTTCCTTCCCCATGCAGAA
CAATACCGGCAAAAAAAGCCTTACTGGAGACACGATCGGCAACAATGTAACTGCAGATATCGCAATCCGGAAAGCATTGA
ACACGGGAATTGACAGAAAAGCCATACTTGACGGAGTAATATACGGAAAAGGGGATGTGGAATACACCGGAGTAGACCAG
AGAACATTTGGAAACCCCGAAGCCAGGATAAAAGACTCAAAACCTGAAGAAGCTATAAAAATACTTGAAGATGCAGGCTG
GAAAGATACAGATGGCGACGGAATCCGGGAAAAAGACGGAACTAAAGCAGAATTTAAACTGTATTACTCTTCCTCTGACC
AGACAAGGCAGGCTCTTTCAGTAGCCGTAAGCGAGCAGGCAAAAAAATTAGGTATAAAAATAAACCTTGTCGGCACAAAC
TGGGATGAAATATACGCAAACCAGTACAGTTCAGCGGTTTTATACGCCTACAGCAGTATAGATACTTTCAATCTGTACCA
GCAATACCATACTAAAGAAGCCGATGATACATACAGAAACCCTGGTCTTTACAGCAACCCTGTTGTGGACGGGTATCTGG
AAACAGCCTTGAGAACTTCAGACCAGGAACAGGCTATTGAAAACTGGAAGTTAGCTGCATACGATGGAAATACCGGTTTT
GGGCCTTCCGCGGATGCAACATGGCTGTGGCTTGTAACAATGGACTATCTCTACGCGGTGGATGAAACCGTAGATATGGG
AACCCCGGAGAAAAATTCCGGGTCAGATATTTTAGGAAATATCTACGAGTGGACAAGGACAAGTGCAACCGATACAGCTC
AGAAATGA

Upstream 100 bases:

>100_bases
GATCAAGAAAAACCAGCAACATCTGTCTGTGGGGACATTAATCGTAATTATAGCAATTATTGGTATTATCACTTCCATGT
CCGGCTGCGTATCCAGCTCG

Downstream 100 bases:

>100_bases
GTTATACTAAAAAAAGAGTAATGGTTCAAAGCGAATGACGATTAAATAAATGCTGATTAAAGTGAGAGATTCTGCCACTT
TAATAAACTGCGCTTTGAAT

Product: peptide ABC transporter ATP-binding protein

Products: Ni2; [Cytoplasm]; ADP; phosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 535; Mature: 535

Protein sequence:

>535_residues
MDDSELGSASGSESGSVSASSTSRASDELVVNVYSHTGEPETGFDPLLGWGCGHVNFEPLIQSTLFKTDDEGAIINDLAT
GYSASPDGKTWTVNVRDDVKFTDGEKLTAEDVAFTFNTAIGSNSELDMSNLENARAVNDTAVEFNLKEPQSSFIWRLRYV
GIVPEHAYKKETYGASPIGSGPYKLVQWDKGQQAIFELNDNYYGQKPYFKKITMLFLDRDTAFAAAKSGNVDIAEIDITH
ANQSINGYDIISLPSSRAFGVSFPMQNNTGKKSLTGDTIGNNVTADIAIRKALNTGIDRKAILDGVIYGKGDVEYTGVDQ
RTFGNPEARIKDSKPEEAIKILEDAGWKDTDGDGIREKDGTKAEFKLYYSSSDQTRQALSVAVSEQAKKLGIKINLVGTN
WDEIYANQYSSAVLYAYSSIDTFNLYQQYHTKEADDTYRNPGLYSNPVVDGYLETALRTSDQEQAIENWKLAAYDGNTGF
GPSADATWLWLVTMDYLYAVDETVDMGTPEKNSGSDILGNIYEWTRTSATDTAQK

Sequences:

>Translated_535_residues
MDDSELGSASGSESGSVSASSTSRASDELVVNVYSHTGEPETGFDPLLGWGCGHVNFEPLIQSTLFKTDDEGAIINDLAT
GYSASPDGKTWTVNVRDDVKFTDGEKLTAEDVAFTFNTAIGSNSELDMSNLENARAVNDTAVEFNLKEPQSSFIWRLRYV
GIVPEHAYKKETYGASPIGSGPYKLVQWDKGQQAIFELNDNYYGQKPYFKKITMLFLDRDTAFAAAKSGNVDIAEIDITH
ANQSINGYDIISLPSSRAFGVSFPMQNNTGKKSLTGDTIGNNVTADIAIRKALNTGIDRKAILDGVIYGKGDVEYTGVDQ
RTFGNPEARIKDSKPEEAIKILEDAGWKDTDGDGIREKDGTKAEFKLYYSSSDQTRQALSVAVSEQAKKLGIKINLVGTN
WDEIYANQYSSAVLYAYSSIDTFNLYQQYHTKEADDTYRNPGLYSNPVVDGYLETALRTSDQEQAIENWKLAAYDGNTGF
GPSADATWLWLVTMDYLYAVDETVDMGTPEKNSGSDILGNIYEWTRTSATDTAQK
>Mature_535_residues
MDDSELGSASGSESGSVSASSTSRASDELVVNVYSHTGEPETGFDPLLGWGCGHVNFEPLIQSTLFKTDDEGAIINDLAT
GYSASPDGKTWTVNVRDDVKFTDGEKLTAEDVAFTFNTAIGSNSELDMSNLENARAVNDTAVEFNLKEPQSSFIWRLRYV
GIVPEHAYKKETYGASPIGSGPYKLVQWDKGQQAIFELNDNYYGQKPYFKKITMLFLDRDTAFAAAKSGNVDIAEIDITH
ANQSINGYDIISLPSSRAFGVSFPMQNNTGKKSLTGDTIGNNVTADIAIRKALNTGIDRKAILDGVIYGKGDVEYTGVDQ
RTFGNPEARIKDSKPEEAIKILEDAGWKDTDGDGIREKDGTKAEFKLYYSSSDQTRQALSVAVSEQAKKLGIKINLVGTN
WDEIYANQYSSAVLYAYSSIDTFNLYQQYHTKEADDTYRNPGLYSNPVVDGYLETALRTSDQEQAIENWKLAAYDGNTGF
GPSADATWLWLVTMDYLYAVDETVDMGTPEKNSGSDILGNIYEWTRTSATDTAQK

Specific function: Required for transport of an unidentified substrate [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789887, Length=425, Percent_Identity=26.3529411764706, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1787762, Length=503, Percent_Identity=24.6520874751491, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI1787052, Length=438, Percent_Identity=23.972602739726, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1789966, Length=368, Percent_Identity=23.9130434782609, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787551, Length=305, Percent_Identity=22.2950819672131, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 58735; Mature: 58735

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDSELGSASGSESGSVSASSTSRASDELVVNVYSHTGEPETGFDPLLGWGCGHVNFEPL
CCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHCCCCCCCCHHHH
IQSTLFKTDDEGAIINDLATGYSASPDGKTWTVNVRDDVKFTDGEKLTAEDVAFTFNTAI
HHHHHHCCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCEECCCCEEEHHHEEEEEEECC
GSNSELDMSNLENARAVNDTAVEFNLKEPQSSFIWRLRYVGIVPEHAYKKETYGASPIGS
CCCCCCCHHHCCCCCCCCCEEEEEECCCCCHHHEEEEEEEEECCCHHHHHHCCCCCCCCC
GPYKLVQWDKGQQAIFELNDNYYGQKPYFKKITMLFLDRDTAFAAAKSGNVDIAEIDITH
CCEEEEEECCCCEEEEEECCCCCCCCCHHHEEEEEEEECCCCEEEECCCCEEEEEEEEEE
ANQSINGYDIISLPSSRAFGVSFPMQNNTGKKSLTGDTIGNNVTADIAIRKALNTGIDRK
CCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCHH
AILDGVIYGKGDVEYTGVDQRTFGNPEARIKDSKPEEAIKILEDAGWKDTDGDGIREKDG
HHHCEEEECCCCEEEECCCHHCCCCCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
TKAEFKLYYSSSDQTRQALSVAVSEQAKKLGIKINLVGTNWDEIYANQYSSAVLYAYSSI
CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHCCCCEEEEEEECC
DTFNLYQQYHTKEADDTYRNPGLYSNPVVDGYLETALRTSDQEQAIENWKLAAYDGNTGF
CHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHCCEEEEECCCCCC
GPSADATWLWLVTMDYLYAVDETVDMGTPEKNSGSDILGNIYEWTRTSATDTAQK
CCCCCCCEEEEEHHHHHHHHHCHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MDDSELGSASGSESGSVSASSTSRASDELVVNVYSHTGEPETGFDPLLGWGCGHVNFEPL
CCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHCCCCCCCCHHHH
IQSTLFKTDDEGAIINDLATGYSASPDGKTWTVNVRDDVKFTDGEKLTAEDVAFTFNTAI
HHHHHHCCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCEECCCCEEEHHHEEEEEEECC
GSNSELDMSNLENARAVNDTAVEFNLKEPQSSFIWRLRYVGIVPEHAYKKETYGASPIGS
CCCCCCCHHHCCCCCCCCCEEEEEECCCCCHHHEEEEEEEEECCCHHHHHHCCCCCCCCC
GPYKLVQWDKGQQAIFELNDNYYGQKPYFKKITMLFLDRDTAFAAAKSGNVDIAEIDITH
CCEEEEEECCCCEEEEEECCCCCCCCCHHHEEEEEEEECCCCEEEECCCCEEEEEEEEEE
ANQSINGYDIISLPSSRAFGVSFPMQNNTGKKSLTGDTIGNNVTADIAIRKALNTGIDRK
CCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCHH
AILDGVIYGKGDVEYTGVDQRTFGNPEARIKDSKPEEAIKILEDAGWKDTDGDGIREKDG
HHHCEEEECCCCEEEECCCHHCCCCCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
TKAEFKLYYSSSDQTRQALSVAVSEQAKKLGIKINLVGTNWDEIYANQYSSAVLYAYSSI
CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHCCCCEEEEEEECC
DTFNLYQQYHTKEADDTYRNPGLYSNPVVDGYLETALRTSDQEQAIENWKLAAYDGNTGF
CHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHCCEEEEECCCCCC
GPSADATWLWLVTMDYLYAVDETVDMGTPEKNSGSDILGNIYEWTRTSATDTAQK
CCCCCCCEEEEEHHHHHHHHHCHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ni2; [Periplasm]; ATP; H2O [C]

Specific reaction: Ni2+ [Periplasm] + ATP + H2O = Ni2+ [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3453116 [H]