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The map label for this gene is rpoE [H]

Identifier: 209695949

GI number: 209695949

Start: 2713011

End: 2713589

Strand: Reverse

Name: rpoE [H]

Synonym: VSAL_I2531

Alternate gene names: 209695949

Gene position: 2713589-2713011 (Counterclockwise)

Preceding gene: 209695951

Following gene: 209695948

Centisome position: 81.61

GC content: 41.28

Gene sequence:

>579_bases
ATGAGTGAGCAGTTAACCGATCAGGTATTGATTGAGCGAGTTCAAAGAGGCGACAAGCAAGCTTTTAATCATTTGGTGAT
TAAGTACCAAAATAAAGTCTGTAATCTTGTCGCTCGTTACGTAAAAAATAGTGGTGATGTTCCTGATGTAGCTCAAGAAG
CGTTCATTAAGGCCTACCGAGCGTTACCAACGTTCCGAGGTGATAGTGCGTTTTATACTTGGCTTTATCGGATAGCGGTC
AATACAGCAAAAAATTATTTAGTTGCTCAGGGAAGAAGGCCTCCAGCATTTGATGTTGATGCCGAAGATGCCGAATATTA
TGAAGGGGCGAGTGCATTAAAAGAAATTACGAACCCTGAGAATTTATCGTTGTCTGAAGAGTTACGACAAATTGTATTTT
CGACGATCGATGCGTTACCTGAAGATTTAAAAACAGCAATAACATTACGAGAGCTAGAAGGGCTAAGTTATGAAGATATT
GCTGCGATAATGGAGTGTCCGGTTGGTACGGTTCGTTCTCGTATTTTCCGAGCTCGTGAAGTCGTCGAGAAGAAAATTCA
ACCGCTAATGCAGCGTTAA

Upstream 100 bases:

>100_bases
ACATAGTGCTCAAGTTAATCGTGGTATAGCAGATTGAAGCTATTACGTTATATAAACTTAATGCGCATTTAAGAATAATA
ACATGGGAGTACCCGCTCCA

Downstream 100 bases:

>100_bases
TGATTTCCAACGGTCAAACGGTGAAGACAATGACTGATAAAGCAAAAATTTCTGCTTTTATTGATAATGAAGAAATGGAC
AATGCGTTTATCGCTTCGTT

Product: RNA polymerase sigma factor RpoE

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSEQLTDQVLIERVQRGDKQAFNHLVIKYQNKVCNLVARYVKNSGDVPDVAQEAFIKAYRALPTFRGDSAFYTWLYRIAV
NTAKNYLVAQGRRPPAFDVDAEDAEYYEGASALKEITNPENLSLSEELRQIVFSTIDALPEDLKTAITLRELEGLSYEDI
AAIMECPVGTVRSRIFRAREVVEKKIQPLMQR

Sequences:

>Translated_192_residues
MSEQLTDQVLIERVQRGDKQAFNHLVIKYQNKVCNLVARYVKNSGDVPDVAQEAFIKAYRALPTFRGDSAFYTWLYRIAV
NTAKNYLVAQGRRPPAFDVDAEDAEYYEGASALKEITNPENLSLSEELRQIVFSTIDALPEDLKTAITLRELEGLSYEDI
AAIMECPVGTVRSRIFRAREVVEKKIQPLMQR
>Mature_191_residues
SEQLTDQVLIERVQRGDKQAFNHLVIKYQNKVCNLVARYVKNSGDVPDVAQEAFIKAYRALPTFRGDSAFYTWLYRIAVN
TAKNYLVAQGRRPPAFDVDAEDAEYYEGASALKEITNPENLSLSEELRQIVFSTIDALPEDLKTAITLRELEGLSYEDIA
AIMECPVGTVRSRIFRAREVVEKKIQPLMQR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=192, Percent_Identity=78.125, Blast_Score=313, Evalue=3e-87,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21879; Mature: 21748

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQLTDQVLIERVQRGDKQAFNHLVIKYQNKVCNLVARYVKNSGDVPDVAQEAFIKAYR
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
ALPTFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPAFDVDAEDAEYYEGASALKEITNPE
HCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
NLSLSEELRQIVFSTIDALPEDLKTAITLRELEGLSYEDIAAIMECPVGTVRSRIFRARE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHH
VVEKKIQPLMQR
HHHHHHHHHHCC
>Mature Secondary Structure 
SEQLTDQVLIERVQRGDKQAFNHLVIKYQNKVCNLVARYVKNSGDVPDVAQEAFIKAYR
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
ALPTFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPAFDVDAEDAEYYEGASALKEITNPE
HCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
NLSLSEELRQIVFSTIDALPEDLKTAITLRELEGLSYEDIAAIMECPVGTVRSRIFRARE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHH
VVEKKIQPLMQR
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]