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The map label for this gene is rseC [C]

Identifier: 209695946

GI number: 209695946

Start: 2710896

End: 2711381

Strand: Reverse

Name: rseC [C]

Synonym: VSAL_I2528

Alternate gene names: 209695946

Gene position: 2711381-2710896 (Counterclockwise)

Preceding gene: 209695947

Following gene: 209695945

Centisome position: 81.54

GC content: 37.65

Gene sequence:

>486_bases
ATGATGACTGCATTAGCAACGGTTCTTGATGTTCAAGATGATATTGTTGTTGTTGGTTGCCAACAAAAAACAAGTTGTAA
TCATTGTGCGTCACAAGATTCTTGTGGGACAGGTATTGTCTCTAAGGTCCTTCCTGGAAAAGTACATCATTGGGCTTTTC
ATACGGATAAAAAATTAACGATTGGGCAAATGGTTGAAATTGGTTTACCAGAGAAAAACTTACTTCAATCCGCTGCTATT
GTTTATCTTGTACCTCTGTTTTTTCTTTTATTTGGCGCCTTAATCTCTGAATGGTTAATTTCTCCTTTAATTGGTATCGG
AGAGGTGACAACAATTGTAATTGCTGGACTTTCATCGTGGGGAGGGTATTTTATTGCGAAAACCCTTTCTCATCGTATTG
AACAGAAAACAGAACAACAAGTTAGTCTAATTAGAGTCCTTGGCGAGTCAATTTCTGACACTATCTCAGTAAATGCCGCA
GGATAA

Upstream 100 bases:

>100_bases
ATTAGTGTTGTTGGGGATATCCCTACCGTAACAGCAAAGCGTATTGCCAACTCTGTCGTATTTGATTCTTCAGACGTCAA
CGTTAAGGAGAAGTAAGAAT

Downstream 100 bases:

>100_bases
GATAGCGACTTGCGAGGAAATTGGGTAGAATCCCGTTACTTGATCTCACGATCCAATCCCATTAACTAATTGAGTTTGTC
ACGTCATTCATGAAGCATAT

Product: sigma-E factor regulatory protein RseC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MMTALATVLDVQDDIVVVGCQQKTSCNHCASQDSCGTGIVSKVLPGKVHHWAFHTDKKLTIGQMVEIGLPEKNLLQSAAI
VYLVPLFFLLFGALISEWLISPLIGIGEVTTIVIAGLSSWGGYFIAKTLSHRIEQKTEQQVSLIRVLGESISDTISVNAA
G

Sequences:

>Translated_161_residues
MMTALATVLDVQDDIVVVGCQQKTSCNHCASQDSCGTGIVSKVLPGKVHHWAFHTDKKLTIGQMVEIGLPEKNLLQSAAI
VYLVPLFFLLFGALISEWLISPLIGIGEVTTIVIAGLSSWGGYFIAKTLSHRIEQKTEQQVSLIRVLGESISDTISVNAA
G
>Mature_161_residues
MMTALATVLDVQDDIVVVGCQQKTSCNHCASQDSCGTGIVSKVLPGKVHHWAFHTDKKLTIGQMVEIGLPEKNLLQSAAI
VYLVPLFFLLFGALISEWLISPLIGIGEVTTIVIAGLSSWGGYFIAKTLSHRIEQKTEQQVSLIRVLGESISDTISVNAA
G

Specific function: Seems To Modulate The Activity Of Rpoe (Sigma-E). [C]

COG id: COG3086

COG function: function code T; Positive regulator of sigma E activity

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rseC family [H]

Homologues:

Organism=Escherichia coli, GI1788923, Length=146, Percent_Identity=32.8767123287671, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007359 [H]

Pfam domain/function: PF04246 RseC_MucC [H]

EC number: NA

Molecular weight: Translated: 17292; Mature: 17292

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTALATVLDVQDDIVVVGCQQKTSCNHCASQDSCGTGIVSKVLPGKVHHWAFHTDKKLT
CHHHHHHHHCCCCCEEEEECCCCCCCHHCCCCCCCCHHHHHHHCCCCHHEEEECCCCCCH
IGQMVEIGLPEKNLLQSAAIVYLVPLFFLLFGALISEWLISPLIGIGEVTTIVIAGLSSW
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHC
GGYFIAKTLSHRIEQKTEQQVSLIRVLGESISDTISVNAAG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCC
>Mature Secondary Structure
MMTALATVLDVQDDIVVVGCQQKTSCNHCASQDSCGTGIVSKVLPGKVHHWAFHTDKKLT
CHHHHHHHHCCCCCEEEEECCCCCCCHHCCCCCCCCHHHHHHHCCCCHHEEEECCCCCCH
IGQMVEIGLPEKNLLQSAAIVYLVPLFFLLFGALISEWLISPLIGIGEVTTIVIAGLSSW
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHC
GGYFIAKTLSHRIEQKTEQQVSLIRVLGESISDTISVNAAG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]