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The map label for this gene is rnfH

Identifier: 209695897

GI number: 209695897

Start: 2652463

End: 2652756

Strand: Reverse

Name: rnfH

Synonym: VSAL_I2477

Alternate gene names: 209695897

Gene position: 2652756-2652463 (Counterclockwise)

Preceding gene: 209695898

Following gene: 209695893

Centisome position: 79.78

GC content: 37.41

Gene sequence:

>294_bases
ATGATACATGTTGAAGTGGTGTATGCCTTGCCAACAGAGCAAGTGGTTTTTAAACTTGCCGTAAAAGCAGATCAAACCGT
TCAAGAGATCATTGAGCAATCTGGTGTATTAGAACGTTATCCTGATATTGATTTAGTCGTAAATAAAGTCGGTGTATTTA
GCCGTAACGTAAAGTTAGATGCGACAATCAGAGATAAAGATCGTATAGAAATTTATCGACCATTACTTGCTGATCCAAAA
GAGATTCGACGAAAAAGAGCGGCACAAGCAAAAAAAGAAGCCGCTAAAAAATAG

Upstream 100 bases:

>100_bases
GTAGCAATGGCATTTGGTAAAGTTTTTCAAGAGCTTACTAATAATATGGTGAATTCATTTACCCAGCGAGCGAAGCAGAT
TTATGTCAATAATTAACGAG

Downstream 100 bases:

>100_bases
AGCAGTATCGGAAAATAAAAAACCGGAAGTCGTTTAACGATTTCCGGTTTTTTGTGTTTAAACGTAGTTTTTCTTTTGTA
AGGAAAATTACATTTTTTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 97; Mature: 97

Protein sequence:

>97_residues
MIHVEVVYALPTEQVVFKLAVKADQTVQEIIEQSGVLERYPDIDLVVNKVGVFSRNVKLDATIRDKDRIEIYRPLLADPK
EIRRKRAAQAKKEAAKK

Sequences:

>Translated_97_residues
MIHVEVVYALPTEQVVFKLAVKADQTVQEIIEQSGVLERYPDIDLVVNKVGVFSRNVKLDATIRDKDRIEIYRPLLADPK
EIRRKRAAQAKKEAAKK
>Mature_97_residues
MIHVEVVYALPTEQVVFKLAVKADQTVQEIIEQSGVLERYPDIDLVVNKVGVFSRNVKLDATIRDKDRIEIYRPLLADPK
EIRRKRAAQAKKEAAKK

Specific function: Unknown

COG id: COG2914

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0125 (rnfH) family

Homologues:

Organism=Escherichia coli, GI87082139, Length=89, Percent_Identity=52.8089887640449, Blast_Score=98, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFH_ALISL (B6EKA7)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002263827.1
- GeneID:   6987774
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I2477
- HOGENOM:   HBG700644
- OMA:   PKDVRRK
- ProtClustDB:   PRK01777
- HAMAP:   MF_00460
- InterPro:   IPR005346

Pfam domain/function: PF03658 UPF0125

EC number: NA

Molecular weight: Translated: 11114; Mature: 11114

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHVEVVYALPTEQVVFKLAVKADQTVQEIIEQSGVLERYPDIDLVVNKVGVFSRNVKLD
CEEEEEEEECCHHHHHHHHHHCCCHHHHHHHHHCCCHHCCCCHHHHHHHHHHEECCEEEE
ATIRDKDRIEIYRPLLADPKEIRRKRAAQAKKEAAKK
EEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIHVEVVYALPTEQVVFKLAVKADQTVQEIIEQSGVLERYPDIDLVVNKVGVFSRNVKLD
CEEEEEEEECCHHHHHHHHHHCCCHHHHHHHHHCCCHHCCCCHHHHHHHHHHEECCEEEE
ATIRDKDRIEIYRPLLADPKEIRRKRAAQAKKEAAKK
EEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA